Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01032 ATGAGTGGAAGAAAATACACATATCATGAATTTGAGGCTCTAGCAAATCAGGCTTTTATCGGTTCGGCCGATGTGGAAAAAGAATTCTGGCATGAGATGGTGAACGGAGAGAAGGGAACCGTTGAGTACGGAGTCAATGTTGAGGGCAGTGCCTTTTCATGCCATCCTAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTTTCAAGACTGCCGCAATCTACATTGAGATTAGTTGGCAAAGAAATTCCAGGAATAACTGATCCTATGCTTTATATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCATTACTTGTATAGCATAAATTATCACCATTCAGGTGCTAACAAAACTTGGTATGGAGTGCCTGCTCATGCAGCCTCTCAGTTTGAAAATGTTGTATTGCATCGTGTGTATAACCATAAAATCATGTCTAAACATGGCGAAGACGAGGCTTTCCAGCTTCTTGCGCATAAAACTACAATGTTCCCTCCAAATATATTGCTACAACATGGTGTCGCTGTTTACAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCTCCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGAGACTGGATTCCAATGGGGGCTATAGCTAGCACTCGTTATGCATATCTCACAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGCAGTTTTATAAGTCCTCAAAAGTAAGAGGTTCAATGAGCAAAAATATTGATTTCCAATCTTATCTTGCAACTGTTGCATCTTTCGTGCAGCTTATGCAATTTTATGAGAAGGCCCTTTCGCGACTTAAAGCTTCCAGAGAATGTTCAATTTCTTCGAATACTGTAGGTACCTTGATTTGTAGCAACTGCCATAGAGATTGTTATGTAGCTTACTTGATGTGCAAGCACTGCTATTCTCTTCCCATTTGTCTTTACCATGACATTGCATTGCAGAGGTGTTCATGTGGGAGAAAATATACTGTTTATAAAAGGGACGATTATCTAGAATTCGAGGATGCTGCTAAGAGTTTTGAACAAGAATATGTAAAGTTAAACCTTGAAGGGAAGGTGAATTTTGAAGTAGACATGTTATCCCCTAGAAATGATTATGATTGCATCCAAGATTCCCATAACCATCCTTGGCATGAAGAAAAAGGTAGCATCAAAGCAGTTCCTTCCATGGGCTTAGTTTCTGAACTGAAAACAAGAGAAATGACCTGCTTAAAGATCAAGTTAGAAAAGATGAAGGAGGAAAAAACTAAGCATGACCAAAACGACACTCGTTTTGTCTCACTCCTCTCCGACATCGTCCGAGGAAACCAGAGCTGGAAACTTGCCTTCAACGACCCTTCTATTTCCTCCACATTGAGGCCCCACCATGTTGAACAGCTCTTGATCCGAACCCTCGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTCCTCGGTTTGCACAAGAGCTTCAACCATTCCACAACATCCTTTGCCATCTTGGTTCATGCTCTTGTTCATCAGAAGCTCTTCTGGCCCGCCAATTCGCTCTTGCACACTCTTCTCTTACGTGGGTCGGAACCAAAATTCGTTTTTTCATGCTTCTTGGATTCTCATCGCAAATGTAAGTTTTTGTCAAATTTGGGTTTTGATTTGTTGGTTCAGAGTTACTTGCAAAATAGAAGGGTTTTAGATGCTGTGGTGGTTGCAAAGCTCATGCTTGAAAACAAGTTGTTGCCTGAAGTTAGAACACTGAGTGCGCTTTTGAATGGTTTATTGAGAATTAGAAGGTTTATAATGGTTTTGGAATTGTTTGATGAGTCGGTGAATGTGGGTGTTCGACCGGATTCTTATACTTGTTCGGCTGTCATTCGGAGCTTGTGTGATTTGAAGGATTTTTCCAAGGCTAAGGAGAAGGTTTGGTGGATGGAAGTGAATAAGTTTGATCTGAGTATCGTAACTTATAATGTCTTAATTCATGGGCTATGCAAGGGTGATCGCGTTTCGGAAGCTGTTGAGGTTAAAAGATCATTGAGTGAAAAGGGTCTAAAAGCAGATTTGGTTACATACTGCACCCTAGTTCTTGGTTTTTGTAGGGTACAACAATTTGAAGCTGGATTGCAGCTTTTTAATGAAATGATTGAATTGGGGTTTGTTCCGAGTGAAGCTGTTGTATCAGGGCTAGTGGATGGGTTAAGAAAGCAAGGAAAGGTTGATGATGCTTATAATTTGGTTGTTCAGAAGGGGGAGGTTGGATGTCGCGATATCTTATTTTGA 2340 0.4064 MSGRKYTYHEFEALANQAFIGSADVEKEFWHEMVNGEKGTVEYGVNVEGSAFSCHPNDKLGRSKWNLKNFSRLPQSTLRLVGKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPAHAASQFENVVLHRVYNHKIMSKHGEDEAFQLLAHKTTMFPPNILLQHGVAVYKAVQKPGEFVISFPRAYHAGFSHGFNCGEAVNFAIGDWIPMGAIASTRYAYLTMLPIIPFEELLCKEAMQFYKSSKVRGSMSKNIDFQSYLATVASFVQLMQFYEKALSRLKASRECSISSNTVGTLICSNCHRDCYVAYLMCKHCYSLPICLYHDIALQRCSCGRKYTVYKRDDYLEFEDAAKSFEQEYVKLNLEGKVNFEVDMLSPRNDYDCIQDSHNHPWHEEKGSIKAVPSMGLVSELKTREMTCLKIKLEKMKEEKTKHDQNDTRFVSLLSDIVRGNQSWKLAFNDPSISSTLRPHHVEQLLIRTLDDSKLALRFFNFLGLHKSFNHSTTSFAILVHALVHQKLFWPANSLLHTLLLRGSEPKFVFSCFLDSHRKCKFLSNLGFDLLVQSYLQNRRVLDAVVVAKLMLENKLLPEVRTLSALLNGLLRIRRFIMVLELFDESVNVGVRPDSYTCSAVIRSLCDLKDFSKAKEKVWWMEVNKFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLSEKGLKADLVTYCTLVLGFCRVQQFEAGLQLFNEMIELGFVPSEAVVSGLVDGLRKQGKVDDAYNLVVQKGEVGCRDILF 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01032 779 Gene3D Cupin 1 278 - -
Aip03g01032 779 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 451 - -
Aip03g01032 779 SMART cupin_9 62 232 IPR003347 -
Aip03g01032 779 Coils Coil 422 449 - -
Aip03g01032 779 Gene3D Tetratricopeptide repeat domain 664 774 IPR011990 GO:0005515
Aip03g01032 779 Pfam PPR repeat family 672 720 IPR002885 -
Aip03g01032 779 ProSiteProfiles JmjC domain profile. 62 232 IPR003347 -
Aip03g01032 779 Coils Coil 358 378 - -
Aip03g01032 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Aip03g01032 779 Gene3D Tetratricopeptide repeat domain 435 663 IPR011990 GO:0005515
Aip03g01032 779 SUPERFAMILY Clavaminate synthase-like 59 257 - -
Aip03g01032 779 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 1 451 - -
Aip03g01032 779 TIGRFAM PPR: pentatricopeptide repeat domain 709 743 IPR002885 -
Aip03g01032 779 TIGRFAM PPR: pentatricopeptide repeat domain 674 707 IPR002885 -
Aip03g01032 779 Pfam JmjC domain, hydroxylase 92 215 IPR003347 -
Aip03g01032 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
Aip03g01032 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01032 Aip-Chr3 9997041 10001271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01032 59 253 C2H2 Transcription Factor Family AT5G04240 46.667 5.29e-53 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip03g01032 JmjC 5.6e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01032 - - ahf:112732604 839.336