LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g01022	ATGGCTTTGTGTTCAGATATTAGATTCAATAATAATATTCTTTTGGTTTTGTTGTTGCTATTTGGCAATGAAGCTTTGGGTGTGTTTTGTTCGGTGCTGGCAGAACAAGAGGCTGATAGAGTTTACAGGCTACCGGGGCAGCCTGTGGTGAAGTTCAAGCAATACGCTGGTTACATCACTGTCAATGAGACTCATGGAAGAGCACTCTTCTACTGGTTCTTTGAGGCTACCGACAAACCTGAACACAAACCACTCCTTCTCTGGCTCAATGGAGGACCAGGCTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAACTAGGACCCTTCTTTCCCCAAAATAGCAGCCAACCAAAGCTAAAGTTGAACCCTTATTCTTGGAACAAAGCCGCAAATCTTTTGTTTTTGGAATCCCCTGTGGGAGTGGGATTCTCCTACACCAACACCAGCAGTGATATTAAGGCTCTTGGTGACAAAATTACTGCTATTGATTCTCACATTTTTATCACCAAATGGTTTAAGCGATTTCCACAATTTAGATCACACGAATTCTACATTTCAGGCGAAAGCTATGCAGGGCACTATGTTCCTCAACTTTCAGAGCTCATATTTGATAACAATCGTGATCCTTCCAAGGAAGACTACATTAAATTCAAAGGATTCATGATTGGGAATGCACTATTGGATGATGAAACAGATCAAAAGGGAATGGTAGATTATGCATGGGACCATGCTGTGCTATCAGATGGTGTATACCATAATATCACATCAAACTGTGACTTCAGATATGCAAATCTAACAGATGAAGGTCTATCAAAGCCATGCAATGATGCACTCAAGAAGTATTTTGATGTGTATAAAATCATTGACATGTATAGCTTATACACTCCAATGTGTTTCACTAACACCAACAGCTCCACCAGAAGGAATACCCCTAAAGTTATCAAGGGCGTTGCTCCTCACACTTTCTCTAAATTTGAAATGTGGCATCAAATACCAGCCAGTGGATATGATCCTTGTGCATCAGATTACACCGCAGCATATCTAAATAGGCCGGAAGTGCAAGAGGCACTACATGCCAATGTCTCCAAAATTCCCTACAAATGGACTCACTGCAGTGATCAAATCAACACTTGGAATGGGTCACCTCAGTCCATGCTTCCTATTCTCAAGAAGCTCGTTGATGGTGGAATTCGCATATGGGTTTTCAGTGGAGATACCGATGGAAGAATCCCTGTAACTTCCACAAGATTAACATTGAGAAAATTGGGGCTTAGCATTGTTCAAGATTGGACTCCTTGGTATACCAGCAGACAGGTGGGAGGATGGACGATTAACTATGATGGGCTCACTTTTGTTACAGTAAGAGGTGCTGGTCATCAGGTTCCAACTTTTCGTCCTAAGCAAGCTCTTCAGCTAATTAGACATTTCTTGGTGAACAAGAAATTACCGGAACACCCAATTAAACAGGGTCCCTTTTGA	1479	0.4185	MALCSDIRFNNNILLVLLLLFGNEALGVFCSVLAEQEADRVYRLPGQPVVKFKQYAGYITVNETHGRALFYWFFEATDKPEHKPLLLWLNGGPGCSSIGYGEAEELGPFFPQNSSQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTSSDIKALGDKITAIDSHIFITKWFKRFPQFRSHEFYISGESYAGHYVPQLSELIFDNNRDPSKEDYIKFKGFMIGNALLDDETDQKGMVDYAWDHAVLSDGVYHNITSNCDFRYANLTDEGLSKPCNDALKKYFDVYKIIDMYSLYTPMCFTNTNSSTRRNTPKVIKGVAPHTFSKFEMWHQIPASGYDPCASDYTAAYLNRPEVQEALHANVSKIPYKWTHCSDQINTWNGSPQSMLPILKKLVDGGIRIWVFSGDTDGRIPVTSTRLTLRKLGLSIVQDWTPWYTSRQVGGWTINYDGLTFVTVRGAGHQVPTFRPKQALQLIRHFLVNKKLPEHPIKQGPF	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g01022	492	Gene3D	alpha/beta hydrolase	35	300	IPR029058	-
	Aip03g01022	492	Pfam	Serine carboxypeptidase	46	478	IPR001563	GO:0004185\|GO:0006508
	Aip03g01022	492	Gene3D	-	339	377	-	-
	Aip03g01022	492	PRINTS	Carboxypeptidase C serine protease (S10) family signature	122	134	IPR001563	GO:0004185\|GO:0006508
	Aip03g01022	492	PRINTS	Carboxypeptidase C serine protease (S10) family signature	135	145	IPR001563	GO:0004185\|GO:0006508
	Aip03g01022	492	PRINTS	Carboxypeptidase C serine protease (S10) family signature	171	196	IPR001563	GO:0004185\|GO:0006508
	Aip03g01022	492	PRINTS	Carboxypeptidase C serine protease (S10) family signature	449	462	IPR001563	GO:0004185\|GO:0006508
	Aip03g01022	492	ProSitePatterns	Serine carboxypeptidases, histidine active site.	449	466	IPR033124	GO:0004185
	Aip03g01022	492	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	30	486	IPR001563	GO:0004185\|GO:0006508
	Aip03g01022	492	SUPERFAMILY	alpha/beta-Hydrolases	36	482	IPR029058	-
	Aip03g01022	492	Gene3D	-	385	478	-	-
	Aip03g01022	492	ProSitePatterns	Serine carboxypeptidases, serine active site.	185	192	IPR018202	GO:0004185
	Aip03g01022	492	PANTHER	CARBOXYPEPTIDASE	30	486	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g01022	Aip-Chr3	9811761	9822824	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g01022	347	482	Calmodulin-binding Proteins	AT2G22960	27.737	3.49e-14	69.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g01022	K16297		-	gmx:100781503	758.829