Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01012 ATGAACAACAACCACACATATGAAACGGAAGATGAAGAAGACGAAGACGAAGAATCACTGGAAGACGAAGAAGATGATGAATCACTGGAAGACGAAAAAGACGATGAATCACTGGAAGATGAAGAAGAAGAATCTCTAGAAGAAGAACCTCTGGAAGGGGAAGAAGATGAAGAATCACTGGAAGACGAAGAAGATGATGAATCACTGGAAGACGAAGAAGAAGAATCTCTGGAAGACGAAAAAGACGATGAATCACTGGAAGATGAAGAAGAAGAACCTCTCGAAGAGGAAGAAGACGAAGAATCACTGGAAGATGAAGAAGAAGAATCTCTGAAAGACGAAGAAGACGATGAATCACTGGAAGATGAAGAAGAAGAATCTCTAGAAGAAGAACCTCTCGAAGACGAAGAAGACGATGAATCACTGGAAGGCGAAGAAGACCATGAATCACTGGAAGACGAAGAAGAAGAATCTCTAGAAGAATGCACCACATCACGAAAGAGAAGCCGCTTCACTACTTTGACCAAGTCAAACATCAAGAAGCTCCGAAAAACTAAAATCAATGAGGTATCATCTAATCTTTCGATCACAAAATCCGAGGCGTGCCTATTGCTAATCCACCATGGTTGGAGCGCCACGAAGGTCGACGAGGCCTGGTTGGACGACGAAGAAAGAGTTCGGAAACTTGTTGGATTGCTCAAACACAACTCCGGAGAGATCATAACAACCCAAACTTGTGAGATATGTTTTGATAATACGGTTTGGTTGGAGAAGAAGTTGAAATCCGCCAAGTGCGGCCACGCATACTGCGTCGATTGTTGGAAGCGCTACATCAATGAGAAGATCAAAGAAGGTCGTCATGAGTGCCTCAAACCCATGAGATGCCCTCATCCATCTTGTGAGGCTTCTTTGGAGATTAACATGATTCGCCGATTCGCTAGCCAGCAAAACAGGAAGATGTACGATCGTTTCTTGTTACGATCTTATGTCGAAACAAGAAAGAATATAAAATGGTGTCCAAGGGCTGATTGCGATCTTGCTGTTCGTTACAAATCAGATGGAAATTATGTTAACAAATATGTTGAAGTAAGTTGCAGGAATGGGCATAAGTTTTGCTGGGGATGCGGCGAAGATGCTCATAGACCCGTGAGTTGTGAAATGATGGCTAAGAAGAACCAAGAAAGTGGTGATTCTAAGAGCTTGCGTTGGATCTCTACTTTCACCAAGAAATGCCCTAGTTGTAAGCAACCCATTGAGAGGAACGGGGGTTGCATGCACGTAACATGCACTGTTTGCAGCTACCAATTTTGCTGGCTATGTCTTTCTGATTGGTTTCTGTGTTCCGCCCGTTGCAACCGTTTCTAG 1365 0.4337 MNNNHTYETEDEEDEDEESLEDEEDDESLEDEKDDESLEDEEEESLEEEPLEGEEDEESLEDEEDDESLEDEEEESLEDEKDDESLEDEEEEPLEEEEDEESLEDEEEESLKDEEDDESLEDEEEESLEEEPLEDEEDDESLEGEEDHESLEDEEEESLEECTTSRKRSRFTTLTKSNIKKLRKTKINEVSSNLSITKSEACLLLIHHGWSATKVDEAWLDDEERVRKLVGLLKHNSGEIITTQTCEICFDNTVWLEKKLKSAKCGHAYCVDCWKRYINEKIKEGRHECLKPMRCPHPSCEASLEINMIRRFASQQNRKMYDRFLLRSYVETRKNIKWCPRADCDLAVRYKSDGNYVNKYVEVSCRNGHKFCWGCGEDAHRPVSCEMMAKKNQESGDSKSLRWISTFTKKCPSCKQPIERNGGCMHVTCTVCSYQFCWLCLSDWFLCSARCNRF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01012 454 Coils Coil 60 131 - -
Aip03g01012 454 SUPERFAMILY RING/U-box 321 391 - -
Aip03g01012 454 Coils Coil 29 49 - -
Aip03g01012 454 ProSiteProfiles Zinc finger RING-type profile. 246 296 IPR001841 -
Aip03g01012 454 Pfam IBR domain, a half RING-finger domain 400 444 IPR002867 -
Aip03g01012 454 Pfam IBR domain, a half RING-finger domain 320 385 IPR002867 -
Aip03g01012 454 ProSiteProfiles TRIAD supradomain profile. 242 454 IPR044066 -
Aip03g01012 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 334 IPR013083 -
Aip03g01012 454 SUPERFAMILY RING/U-box 243 332 - -
Aip03g01012 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 144 454 - -
Aip03g01012 454 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 144 454 IPR031127 GO:0004842|GO:0016567
Aip03g01012 454 SMART ibrneu5 393 447 IPR002867 -
Aip03g01012 454 SMART ibrneu5 319 385 IPR002867 -
Aip03g01012 454 MobiDBLite consensus disorder prediction 8 159 - -
Aip03g01012 454 Gene3D - 381 454 - -
Aip03g01012 454 MobiDBLite consensus disorder prediction 1 167 - -
Aip03g01012 454 SUPERFAMILY RING/U-box 403 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01012 Aip-Chr3 9700965 9702329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01012 169 444 ARIADNE family AT1G05890 41.696 2.86e-73 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01012 K11968 - gmx:100801350 291.967