Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01005 ATGAAACTGGCAGTAATTCAATGGCGAAGATGGAGGAACAGCCGTCGTGAGGGTGGCTGGGTGCCTCTCTCTCTCCCCTTGCTATTGCCACACACCCCAGCCATCTTGCACACCTTCGTCTTTATCTTTCCCTTCACGATGGCACGGCCCTCAGCGCCCTTTTTGGCTCTGCATCGCGCGCCGTCGTCACGTTGGGCAATTCTTCCGATATGGATGTCGTCGTCTTCGTCAACTATTTTGGGTGATTCAGGTAGATGTAAGGAAACCTGCGGCAATGTTGCCAATGGGAATGATATTTATGAGGCAAATGTCATATCGGGTAAGATGGGTCAACTCCAAAGAGACATGACAAATCTTAATCAAAGATCTATGGAAGTTGATGATGTTCGTAGTGATTTGAATGAGGTTTTCAAAGATTCCACACCAAAGGATGTTCCTGTAATATCTGGTCATGAGGAGTCCAAAATTTTTCAAGCAAAGTTGCAATTACCCTCTTCTTCCCAAGATTTAAATTCAGATGATGTTTCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTTTAAGGTTATTCAATACTTTATTATTTTTGAGTCCATTTAAGTTGGAGGATCTTGTAGTTGCTTTGAAGTCCAAAATCCTAAGTATATTATTTGATAGCATTCATGTTTCTATTTTGAAAACTCTGAAAAAGCATTTGGAATACCTTTCCAACGAGGATATTCAATCTGCATCTGATTGTCTGAGGATTTAA 750 0.4093 MKLAVIQWRRWRNSRREGGWVPLSLPLLLPHTPAILHTFVFIFPFTMARPSAPFLALHRAPSSRWAILPIWMSSSSSTILGDSGRCKETCGNVANGNDIYEANVISGKMGQLQRDMTNLNQRSMEVDDVRSDLNEVFKDSTPKDVPVISGHEESKIFQAKLQLPSSSQDLNSDDVSVLEVFSIYACLRLFNTLLFLSPFKLEDLVVALKSKILSILFDSIHVSILKTLKKHLEYLSNEDIQSASDCLRI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01005 249 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 140 248 - -
Aip03g01005 249 PANTHER PHD FINGER FAMILY PROTEIN 140 248 - -
Aip03g01005 249 ProSiteProfiles DDT domain profile. 174 234 IPR018501 -
Aip03g01005 249 Pfam DDT domain 177 230 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01005 Aip-Chr3 9647421 9648444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01005 160 248 PHD Transcription Factor Family AT5G12400 58.427 1.34e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aip03g01005 DDT 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01005 - - adu:107485507 266.544