Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01000 ATGGCTTTTCGCATTCCAAGTATTAGAAAGGCATCACTTTCTGCAGCAAAAGGGACTAATGTTCCAAAAGGCTATCTTGCAGTCTATGTGGGAGATAAGATGAGGCGATTTGTGATTCCTGTATATTACTTGAACCAACCTTCATTTCAAGAGTTACTAAGCCAATCAGAAGAAGAATTCGGTTATGATCACCCAACAGGCGGTCTCACAATTCCATGCAGCGAGGATGCCTTCTTGAACCTCACTTGTCAATTAAGTGGGCAGTAA 267 0.4195 MAFRIPSIRKASLSAAKGTNVPKGYLAVYVGDKMRRFVIPVYYLNQPSFQELLSQSEEEFGYDHPTGGLTIPCSEDAFLNLTCQLSGQ 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01000 88 Pfam Auxin responsive protein 10 84 IPR003676 GO:0009733
Aip03g01000 88 PANTHER AUXIN-INDUCED PROTEIN 10A5 12 86 - -
Aip03g01000 88 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 86 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01000 Aip-Chr3 9596529 9596795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01000 20 78 Calmodulin-binding Proteins AT3G43120 55.932 1.82e-19 75.5