Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00986 ATGGCCAAGACTAGCAAGAAATCAGCTTCCAAAGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGCAAGTTAGTTTAAAGAAACAGAAGATAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGTGAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGATTCTGAAGATGAGAAACCTGCTACCAAAGTTGCTGTTGCTTCAAAGAAGAAGCCTGCTAAGAACGGCACTTTAAGCTCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTGCTTCAGAGTCTGAAGATGAGGTGCCCAAATCCAAGGTGCTGCCTGCTGTGGTTAAGAATGGATCTGCTTCTGCAAAGAAACCAAGTGAAAGCTCCGAGTCTGAGGACAGCGGCTCTGAGGAGGAAAAGGATAAGAAAAAACCTGTAGCCAAATCATCTGCAGTTCCAAGTAAGAAAGTTGAGACAACTGAAAGTTCAGATGATGATTCAAGTGAAAGCTCTGATGAAGAAGAAAATGGTGCAAAACCGACTGCAAATGCGGCATCCAAGCCTTCTGCTATAGCTAAGAAGAATGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCCAAAGATGAGAAGGGAAAAATGGATGTTGATGAAGAAGAGAGCTCTGATGAAAGTGATGATGAGCCAAAAAAGCCTGTGAAAGTTTCAAAAGAAAGCAGTGATAGTTCGGATGACAGTGATGAGGAAGAAGAGAAACCTTCTAAAACTCCTCAGAAAAGTGCTAAGGATGTGGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTCCTAAAACCCCTTCTACACCTAGTGCTGCAACAGGTGGATCAAAGACACTATTTGTTGGAAATCTGTCATTTAGTGTGCAACGATCTGACGTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTTTTTCTGTTGACGATACTGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCTACTGCAGAGGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCGTCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAGGTGGTCAGCGTCAAACTGGCCAAACTATATACATAAGGGGTTTTGATAAATCTCTTGGAGAAGAAGAGGTAAGAGCTAGCCTAAATGAGCATTTTGGTGCCTGCGGGGAGATCTCGAGGGTGTCAATCCCAAAAGATTTCGAGTCTGGATATCCTAAAGGTTTTGCCTATATCGACTTCAAGGATTCTTCTAGCATGAAAAAAGCTCTAGAACTCAATGAAACTGAACTTGCTGGTGGTTATTACCTCTCAGTTGAAGAAGCCAAACCTAGAGATGGCTTTGGTTCAGGTGGTGGAAGAGGTGGCGGTCGATTTGGAGGTAGGAGTAATGAAGGTGGTCGATTTGGAGGAAGGAGTGGTGGTGGCCGATTTGGTGGTGGAAGGGGTGGTAGTGATCGAGGCAGAGGTGGTCGAGGAAGAGGTGGGGGAAGGGGTTTTGGAAATAAACCGACATTTGCTGCAGAAGGAAAAAAGACCACATTTGCCGATGACGACTAG 1680 0.4423 MAKTSKKSASKVETAPPVKKGKRQADEELEKQVSLKKQKIEEAAQKQKKEVKVQKKKEESSSDDSSSDSEDEKPATKVAVASKKKPAKNGTLSSPAKKAKPASSSSSDDSASESEDEVPKSKVLPAVVKNGSASAKKPSESSESEDSGSEEEKDKKKPVAKSSAVPSKKVETTESSDDDSSESSDEEENGAKPTANAASKPSAIAKKNDDSDSSDSDDSSSKDEKGKMDVDEEESSDESDDEPKKPVKVSKESSDSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVPKTPSTPSAATGGSKTLFVGNLSFSVQRSDVEEFFKDCGEVVDVRFSVDDTGRFKGFGHVEFATAEAAQSALELNEHELLNRPVRLDLARERGAYTPGGSNSFQKGGQRQTGQTIYIRGFDKSLGEEEVRASLNEHFGACGEISRVSIPKDFESGYPKGFAYIDFKDSSSMKKALELNETELAGGYYLSVEEAKPRDGFGSGGGRGGGRFGGRSNEGGRFGGRSGGGRFGGGRGGSDRGRGGRGRGGGRGFGNKPTFAAEGKKTTFADDD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00986 559 MobiDBLite consensus disorder prediction 16 79 - -
Aip03g00986 559 CDD RRM1_NUCLs 305 381 IPR034349 -
Aip03g00986 559 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 263 553 - -
Aip03g00986 559 PANTHER BNAA08G02930D PROTEIN 263 553 - -
Aip03g00986 559 MobiDBLite consensus disorder prediction 240 255 - -
Aip03g00986 559 MobiDBLite consensus disorder prediction 483 559 - -
Aip03g00986 559 Coils Coil 26 57 - -
Aip03g00986 559 Gene3D - 246 398 IPR012677 -
Aip03g00986 559 SUPERFAMILY RNA-binding domain, RBD 401 516 IPR035979 GO:0003676
Aip03g00986 559 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 402 484 IPR000504 GO:0003723
Aip03g00986 559 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 473 IPR000504 GO:0003723
Aip03g00986 559 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 373 IPR000504 GO:0003723
Aip03g00986 559 Gene3D - 399 485 IPR012677 -
Aip03g00986 559 SMART rrm1_1 403 480 IPR000504 GO:0003723
Aip03g00986 559 SMART rrm1_1 305 376 IPR000504 GO:0003723
Aip03g00986 559 MobiDBLite consensus disorder prediction 205 229 - -
Aip03g00986 559 MobiDBLite consensus disorder prediction 139 161 - -
Aip03g00986 559 MobiDBLite consensus disorder prediction 263 286 - -
Aip03g00986 559 MobiDBLite consensus disorder prediction 1 305 - -
Aip03g00986 559 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 380 IPR000504 GO:0003723
Aip03g00986 559 SUPERFAMILY RNA-binding domain, RBD 294 399 IPR035979 GO:0003676
Aip03g00986 559 MobiDBLite consensus disorder prediction 290 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00986 Aip-Chr3 9508622 9513695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00986 270 465 Eukaryotic Initiation Factors Gene Family AT1G49760 27.228 1.63e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00986 K11294 - ahf:112789008 514.227