Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00962 ATGGCGGTGATCGATGACGCCAATCCTTTTCTGCTCCATTCCTTCGATCAACCGAACCTTGCCTTGGTCACGCAAATGCTCACCGGTGACAATTATCCTTCATGGAAGAGATCGATGGAAATGGCGCTCAATGGCAAAAACAAACTTGGATTCGTTGACGGCACGATTCTGCCGCCTGAGGAAGGTGCGTCTCACTCTTTCAAGCTCCACTGGCATCGTCTGAATGACATCGTCAGCACCTGGATTCTCAACTCTGTCTCCAAGGAGATCGCATCGAGCTTGATCTTTGCTGGTTCTGCTCATGAGATTTGGATAGATCTAGGTCACCGATTTCAGCAAAAGAACCGTCCTCGAATCTATGAACTGCGAAAAGAGTTAATCAATCTGAAACAGGATTCTCTCTCTATCTCTCAATTTTTTACTAAGCTGAAGTGTGTGTGGGAGGAATTATGCCATTTTCGACCTTCAGTACACTGTAATTGTGGTGGTGCTCGTGAATTTTTAGCTCATGCTGATGAGGAATATGTTCTTGTCTTCTTGATGGGGTTGAATGATGTGTACCATCAAGTTCGGAGCCAAATTCTGTTGATGAAGCCTTTGCCTAGCATCTCTGAAGTTTTCTCGCTAATCGTTCAAGAAGAGCGGCAACGAGGATTGACTCTTGCTCCTCCAACAAGCAATGAGACGCAACTGGCTTTTGCCGTGAAGAACACACAGTATAACTCCAAGATCCGTCCAGGGAAGAAAGATAAGCCGCTCTGTGCTCAATGCGGTTTACTCAGCCACACCAAGGATAAATGCTACAAGTTACATGGTTATCCACCTAATTACAAGAAGCAAAGTCCAGCCACAGTTCGGGTCAATCATGTGGACACAAGTCAGGACATTCCTCTTCAGCTCACTTCTCAACAGTATCAACAATTAATATCACTATTATCCACACAAGTTCCATCCACAATGCCCCCTATTATCACTGCTGAAGCTTCAAGCGCAGGGGAAGGTAAACTTTTCTCTGCTGCTTTAATTTATGCACTTGGAGTTAAATCATGGATCTTAGATTCTGGCGCTACTTGCCATGTGACCTGTACTTTGGACAATTTCAAACCTTCAATTTGGTTTGCAAATAAGTTTGTGGTTCTCCCTGATCATACTCGCGTACCTGTGCTTGCTTCTGGTTCTGTTTCCTTATCTCAAACCCTCACACTCACTGAAGTTTTGTATGTGCCTTCATTCAAAATTAACCTGATTTCAGACCACCTGAACTCCAAGATGATTGGGAAAGGTGAATTGAAACACGGATTCACTTATTCTTCCTTACCTGATCCTTTTGATGATCATGTCCTTCCTAAGCCAATTGAAGTTTTCCTTAATACACCTCAACTCGTTGCTCCGGCTACACCTGTCCCTATTGTGACACAGCCACAAGCTGAGAACCCACAGCCGTTGAGAAGAAGTCAGCGACTCCATAGTGTGCCTACCTATCTTACAGACTACCATTGCAACAATGTGGTGAATCCTTTGGCGATGAGAATGGGAAAAGAGAAGAGTCATATCAACATCGTCGTTATCGGCCATGTGGACTCCGGCAAGTCGACCACCACCGGCCACCTCATCTACAAGCTTGGAGGGATCGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAGGCAGCTGAGATGAACAAGCGTTCATTCAAGTACGCCTGGGTTCTCGACAAGCTCAAGGCAGAGCGCGAGCGTGGTATCACCATTGACATCGCCCTGTGGAAGTTTGAGACCACGAAGTACTACTGCACTGTGATCGATGCACCTGGTCATCGTGATTTCATCAAGAACATGATCACTGGTACCAGCCAGGCTGACTGTGCTGTTCTGATAATCGATTCCACCACCGGTGGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCATGCTCTGCTTGCTTTCACCCTTGGTGTTAGGCAGATGATCTGCTGTTGCAACAAGATGGATGCAACGACCCCAAAATACTCCAAGGCTAGGTATGATGAAATTGTAAAGGAGGTTTCATCCTATTTGAAGAAGGTTGGTTACAACCCTGAGAAGATCGCATTTGTCCCGATTTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACCAAGCTTGATTGGTACAAGGGACCTACCCTGCTTGAGGCTCTGGACCAGATCAATGAGCCAAAGAGACCCTCTGACAAGCCTCTCAGGTTGCCACTTCAGGATGTCTACAAGATTGGTGGTATTGGAACTGTTCCAGTTGGTCGTGTAGAGACTGGTATCCTCAAGCCTGGTATGGTCGTGACCTTTGCCCCCACTGGACTCCAGACTGAGGTTAAGTCTGTGGAGATGCACCATGAGTCTCTCCCTGAGGCTCTCCCTGGTGACAATGTTGGTTTCAATGTTAAGAATGTTTCTGTGAAGGAGTTGAAGCGTGGCTTTGTTGCTTCTAACTCAAAGGATGATCCTGCTAAGGAGGCTGGAAGCTTCACCTCTCAAGTCATCATCATGAACCACCCTGGCCAGATTGGCCAAGGTTATGCTCCAGTCCTTGACTGCCACACCTCACACATTGCTGTCAAGTTTGCTGAGCTCCAGACCAAGATTGATAGGCGTTCTGGCAAAGAGCTCGAGAAGGAGCCCAAGTTTCTTAAGAATGGTGATGCTGGTATGGTGAAGATGATTCCCACAAAGCCAATGGTTGTTGAGACTTTTGCTGAGTACCCTCCACTTGGAAGGTTTGCTGTGAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGAGCGTTGAGAAGAAGGATGCTTCTGCTAAGATCACTAAATCTGCTGCCAAGAAAGCTGCCAAATGA 2877 0.4672 MAVIDDANPFLLHSFDQPNLALVTQMLTGDNYPSWKRSMEMALNGKNKLGFVDGTILPPEEGASHSFKLHWHRLNDIVSTWILNSVSKEIASSLIFAGSAHEIWIDLGHRFQQKNRPRIYELRKELINLKQDSLSISQFFTKLKCVWEELCHFRPSVHCNCGGAREFLAHADEEYVLVFLMGLNDVYHQVRSQILLMKPLPSISEVFSLIVQEERQRGLTLAPPTSNETQLAFAVKNTQYNSKIRPGKKDKPLCAQCGLLSHTKDKCYKLHGYPPNYKKQSPATVRVNHVDTSQDIPLQLTSQQYQQLISLLSTQVPSTMPPIITAEASSAGEGKLFSAALIYALGVKSWILDSGATCHVTCTLDNFKPSIWFANKFVVLPDHTRVPVLASGSVSLSQTLTLTEVLYVPSFKINLISDHLNSKMIGKGELKHGFTYSSLPDPFDDHVLPKPIEVFLNTPQLVAPATPVPIVTQPQAENPQPLRRSQRLHSVPTYLTDYHCNNVVNPLAMRMGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIAFVPISGFEGDNMIERSTKLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPTGLQTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKELKRGFVASNSKDDPAKEAGSFTSQVIIMNHPGQIGQGYAPVLDCHTSHIAVKFAELQTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDASAKITKSAAKKAAK 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00962 958 PANTHER TRANSLATION FACTOR 492 955 - -
Aip03g00962 958 SUPERFAMILY Translation proteins 741 831 IPR009000 -
Aip03g00962 958 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 511 943 IPR004539 GO:0003746|GO:0005525|GO:0006414
Aip03g00962 958 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 836 939 IPR009001 -
Aip03g00962 958 CDD EF1_alpha_II 740 830 - -
Aip03g00962 958 Hamap Elongation factor Tu [tuf]. 512 942 IPR004539 GO:0003746|GO:0005525|GO:0006414
Aip03g00962 958 PANTHER ELONGATION FACTOR 1-ALPHA 1 492 955 - -
Aip03g00962 958 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 571 586 IPR031157 -
Aip03g00962 958 Gene3D Translation factors 833 940 - -
Aip03g00962 958 CDD EF1_alpha_III 833 936 - -
Aip03g00962 958 Gene3D - 502 738 IPR027417 -
Aip03g00962 958 Pfam Elongation factor Tu GTP binding domain 515 732 IPR000795 GO:0003924|GO:0005525
Aip03g00962 958 PRINTS GTP-binding elongation factor signature 614 625 IPR000795 GO:0003924|GO:0005525
Aip03g00962 958 PRINTS GTP-binding elongation factor signature 658 667 IPR000795 GO:0003924|GO:0005525
Aip03g00962 958 PRINTS GTP-binding elongation factor signature 578 586 IPR000795 GO:0003924|GO:0005525
Aip03g00962 958 PRINTS GTP-binding elongation factor signature 519 532 IPR000795 GO:0003924|GO:0005525
Aip03g00962 958 PRINTS GTP-binding elongation factor signature 598 608 IPR000795 GO:0003924|GO:0005525
Aip03g00962 958 Pfam gag-polypeptide of LTR copia-type 13 59 IPR029472 -
Aip03g00962 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 759 IPR027417 -
Aip03g00962 958 CDD EF1_alpha 519 737 - -
Aip03g00962 958 Pfam Elongation factor Tu C-terminal domain 832 939 IPR004160 -
Aip03g00962 958 Pfam Elongation factor Tu domain 2 758 823 IPR004161 GO:0005525
Aip03g00962 958 Pfam Retrotransposon gag protein 72 185 IPR005162 -
Aip03g00962 958 Gene3D Translation factors 739 826 - -
Aip03g00962 958 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 515 740 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00962 Aip-Chr3 9284413 9292479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00962 511 949 Eukaryotic Initiation Factors Gene Family AT5G60390 93.636 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00962 K03231 - thj:104810843 837.025