Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00961 ATGGTGGTGATCATGCAACAACAGCAGCAGAACCCCTCTGCACTGGTTCCACCGCCGCAGCCGCCGCCGCCGCAACACATCAACAACGCTCAGTCTTCAGCTTCCTCCGCCTCCGCCGCCGCTACAGCTGTCACCTCCCTTAGGTCACCCTCCTCCTCCGCCACTGCCGTTGGACACTCTCAGCTATCTTCGCCTTCCTCTCTTGCTCCCGTTCCCATTCAGCAGCGGCAACCCTTGCTCTCCTCAGTGCCGCTGCCACCTGACCATGCTGTTGGAGCGGTGGTTCCCATCGCCGCAGCTCTGCCGTCTGGTGCTGGTGACCCCCCGGTGGTGTCAGTGACGTCTCCACTGGCGAGAGTCCGGCTATCGGACATTGCGCCTTACGACGGGGCACCGGCGGGGCCCTATGTTAGGGCTGTGGAAGCTTTGTCTGGGTCGCTGATGAGGCACAATGCGGCCTTGATCGAGTTGGGGAGCGAGGATTCGGCTCTGATGCGGTGCGGGTTGGAAGGTTCAAGATTGTTCTTCAGGAGCAGGGCTCAATTGGGTGATGGGAAGGGAAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTCGAGGATTGGGATTCATCTCCACCTTGTATGGCTGATATTTTTAGGTGCATGGGAAAGGCGTCTCGATCTGCTTTGTGTGCCATTGCCAGGCATCTGCGCCTCCGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCCTTGCCTGCTAATGAGGTATCTTCATCAGTTCTTGTTGCCACTCACTCACATTCTTCTTTGCAAAATGGAAAAGGGGCTATTGGAGGGGGCAAGCCTACTGTCAATGGAGAAGTGGAGAAGGGATTGTTGACATTGATATCTACAGACACTCCTGGTCTTCAGGTATGTGACCCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCAGGGGATCTTTTATTGATAACTGGCAAGGCACTTAGCCATGCTACTGCAGGCCTACGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTCTAGGTTCTAATAGTGGAGGAAGGACTTCTCTTGCTTATAGACTCATGCCACAGGGAAATGCAATATTAGATTGTTCTCCAATTGCAGCAGCTGGCCATGTTATACCCCAAAGCTATGTTCCAATATCTGTTAGCCAGTTTATGGATGACCTGGCTACTGAAGAACTCATAGGTAGCAGAAGCGATAATGATGATGTTGCTCAAGACAATGTGAATAAGGATCCCTCATTAAGAAGTGTTCTATCAGATCCATTATCTGGTGCATTCCTTGAAGATGCCATGCTTGTCTCATGTGGACACTCATTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACATCGAGATGTACTGTCTGCAATGCTGATGTAGAGACAAGTTCTTTGATCCCTAACCTTGCTCTTAGAGCTGCAGCTGTTGCTGTTAAGCATGAGGATGATCGAAGGTTATTTCGCAATGCTGCTCTACGAAAGCGGCGAAAAGAAATGGGTGACCAAATCGATCCAATCAGAAGAGTGAATAGGGAAAATGGAGATTTTACTGCTGCTGATGGACTGCAAAGGGGAGTACAATATCCATTTTCAGTAAATGAGAAGGTTATTATTAAGGGTAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTCATTACGTCTCAGTGTCTTAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGAGAGAATGTCCGCTTGCAGTACCGTTCCCTTAGGAAGCTCTTAAACTCACCAGCTTTAGAGGACCAGTGTCCTACACAGCCAATTCAAAATAGCAGCTCCTAG 1854 0.4989 MVVIMQQQQQNPSALVPPPQPPPPQHINNAQSSASSASAAATAVTSLRSPSSSATAVGHSQLSSPSSLAPVPIQQRQPLLSSVPLPPDHAVGAVVPIAAALPSGAGDPPVVSVTSPLARVRLSDIAPYDGAPAGPYVRAVEALSGSLMRHNAALIELGSEDSALMRCGLEGSRLFFRSRAQLGDGKGSRGVYMYRAGRAFEDWDSSPPCMADIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVATHSHSSLQNGKGAIGGGKPTVNGEVEKGLLTLISTDTPGLQVCDPNGRWYLADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFLGSNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLATEELIGSRSDNDDVAQDNVNKDPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGLMLRRVIETSRCTVCNADVETSSLIPNLALRAAAVAVKHEDDRRLFRNAALRKRRKEMGDQIDPIRRVNRENGDFTAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIETGENVRLQYRSLRKLLNSPALEDQCPTQPIQNSSS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00961 617 SUPERFAMILY Clavaminate synthase-like 210 376 - -
Aip03g00961 617 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 112 615 - -
Aip03g00961 617 Gene3D - 177 405 IPR027443 -
Aip03g00961 617 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 112 615 - -
Aip03g00961 617 MobiDBLite consensus disorder prediction 1 69 - -
Aip03g00961 617 MobiDBLite consensus disorder prediction 27 69 - -
Aip03g00961 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 494 IPR013083 -
Aip03g00961 617 SUPERFAMILY RING/U-box 426 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00961 Aip-Chr3 9274501 9280889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00961 426 602 Plant U-box Gene Family AT5G05230 40.678 1.15e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00961 - - adu:107477161 1196.8