Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00956 ATGGCTTCGGCGTTCGTCAAGCTCGATGATTCTCCAATGTTCCAGAAGCAGGTATTGTCTCTTGAAGCAAATGCTGATGAGTTAAAGGATCGGTGCCAGAAGCTGTTCAAAGGATGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTGGCTTTGCTGATTCATTAGAAATATTTGGCGGTGGCCTGGATGACCCTGTTAGCGTGTCAATTGGAGGACCGGTCATATCTAGATTTGTTACTACATTACGTGAGCTAGCTACTTTTAAAGAGCTTCTTCGTTCGCAGGTTGAACATGTGATGATTGACCGGCTCGCAGAGTTTATGAATGTTGATTTGCAAGAGGCAAAGGATTCTCGGAAACGTTTTGACAAAGCTATGCATTCTTATGATCAGTCACGAGAAAAATTTGTATCTTTGAAGAAAAATACGCCGGAAGACGTTGTTGCTGAATTAGAAGAGGATCTACAAAATTCGAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTACACTCTCTCATGAATATCGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCGATAATGGATGCTCATCTAAGATACTTTAAGCTGGGCTATGAGTTATTGAGCCAAATGGAACCGTATATTCACCAGGTGTTAACATGTGCACAACAATCTAAAGAACTGGCTAATATTGAACAAGATAAGCTTGCAAAACGAATCCAAGAATACAGAACACAGGCTGAGTTGGAAAGCACACGAGCTTCTAACAACACGGAACCCTTGCCAGGTGCTGATGGCACACATGTTGTAGGTTTGAACACTTACAAAGGCTTTGAAGGAGGGATGCAGCCTGCGGCCAAAGGGGAGGCAATTAAACAGGGCTATCTATTAAAACGCTCTTCAAGCTCACGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAGGGGAGTTTATTTTATTACAGCATGAAGGGACCCAAACCCAAGGGTGCTCAGTCATATAATTATAATCGTCCTCCTGAACAAAATAGTGGCATGTTTGGTAGATTTCGATCAAGGCACAACAGGTCATCATCACAAAATGAGGATGCTTTGGGTTGTTGTTCAATTGATCTGTGCACATCCTCTATAAAGATGGATGCAGAGGATACAGATCTACGTCTTTGCTTCCGTATAATTTCTCCCTCAAAAACATATACTCTGCAGGCAGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGGGCTGTCACGTCGCTCTTTAATTCTCACTTTCTTCAACAGCCTCGTTATGATAGAGAAAATAGAAACTCAGCAACTGGTGCTTCGTCAACTAGTCAATCAGAGGATGGTGACAAATATTTGATGGATGACATATATCCAAAGGAAGTCCATAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAATGCAGTGCTGCTGATCCGGACTGGGCATCTTTAAACCTTGGCATATTACTCTGTATAGAATGCTCTGGAGTGCATCGAAATCTTGGAGTTCATATCTCGAAGGTGAGATCTATAACATTAGATGTTAAGGTATGGGAGCCTACTATTTTGGAGTTATTTGATAAGTTGGGTAATGCTTATTGTAATTCGATATGGGAAGGCATGCTTCTACTTGGTAATGAAAGAGTAGGTGAATCAAATGGGCCAGCAAAACCATGTTTCATGGATGCCTTCCAAGATAAGGAAAAGTACATACAGGCAAAGTATGTACAGAAATCATTAATTATCAGAGAAGAGGATATTCCCGGGAATCCTTCAGTTTCTGTAAGACTCTGGCTAGCAGTTCAAGCTATGGATGTACGAGAAGTATATCGCCTTATTGTAATCTCAAACTCAAATGTAGTAAATACAAAATATGATGATGTGGTTTCCCATGCTGATGCTAAAGCCCTGGACTTAGAATGTATTATATTGGAAGGCCATGAGCAGGATTCTGAATCTTGCCTCAGCATTAAACAGACTAATGAGACACAGAAGTGTTTCCATGGTTGGTCATTATTACATCTAGCATGTCATTCTGAACATGCACTAATGGTTGAGTTGTTACTTCAATTTGCTGCTGATGTAAACATGCAAGACTATCATGGTAGAACTCCCTTGCACCATTGCATCACCGGTGGAAAAAATTCACTGGCGAAGTTTCTGTTGAGAAGGGGTGCTAGACCGTCAGTTAAAGATGCCGGCGGACTCACTATGGAAACGGTGGCAGCTAAAACTTTGATATGGTGTGGAATTCGGAGACTAACAGCTCCTTCCTTTTATGAAACCGAACCTCTGCTGATTGCATTTTGA 2361 0.4104 MASAFVKLDDSPMFQKQVLSLEANADELKDRCQKLFKGCKKFMTALGEAYNGEIGFADSLEIFGGGLDDPVSVSIGGPVISRFVTTLRELATFKELLRSQVEHVMIDRLAEFMNVDLQEAKDSRKRFDKAMHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSAFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYELLSQMEPYIHQVLTCAQQSKELANIEQDKLAKRIQEYRTQAELESTRASNNTEPLPGADGTHVVGLNTYKGFEGGMQPAAKGEAIKQGYLLKRSSSSRGDWKRRFFVLDNQGSLFYYSMKGPKPKGAQSYNYNRPPEQNSGMFGRFRSRHNRSSSQNEDALGCCSIDLCTSSIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAVTSLFNSHFLQQPRYDRENRNSATGASSTSQSEDGDKYLMDDIYPKEVHSVSKILRGIPGNDKCAECSAADPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFDKLGNAYCNSIWEGMLLLGNERVGESNGPAKPCFMDAFQDKEKYIQAKYVQKSLIIREEDIPGNPSVSVRLWLAVQAMDVREVYRLIVISNSNVVNTKYDDVVSHADAKALDLECIILEGHEQDSESCLSIKQTNETQKCFHGWSLLHLACHSEHALMVELLLQFAADVNMQDYHGRTPLHHCITGGKNSLAKFLLRRGARPSVKDAGGLTMETVAAKTLIWCGIRRLTAPSFYETEPLLIAF 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00956 786 Pfam BAR domain of APPL family 8 230 - -
Aip03g00956 786 SUPERFAMILY Ankyrin repeat 616 761 IPR036770 -
Aip03g00956 786 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 755 - -
Aip03g00956 786 PRINTS HIV Rev interacting protein signature 485 504 IPR001164 GO:0005096
Aip03g00956 786 PRINTS HIV Rev interacting protein signature 504 521 IPR001164 GO:0005096
Aip03g00956 786 PRINTS HIV Rev interacting protein signature 527 548 IPR001164 GO:0005096
Aip03g00956 786 MobiDBLite consensus disorder prediction 250 269 - -
Aip03g00956 786 MobiDBLite consensus disorder prediction 440 458 - -
Aip03g00956 786 Pfam Ankyrin repeats (3 copies) 678 749 IPR002110 GO:0005515
Aip03g00956 786 SMART PH_update 293 428 IPR001849 -
Aip03g00956 786 ProSiteProfiles ARF GTPase-activating proteins domain profile. 473 605 IPR001164 GO:0005096
Aip03g00956 786 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Aip03g00956 786 SMART ANK_2a 718 747 IPR002110 GO:0005515
Aip03g00956 786 SMART ANK_2a 685 714 IPR002110 GO:0005515
Aip03g00956 786 ProSiteProfiles Ankyrin repeat profile. 718 750 IPR002110 GO:0005515
Aip03g00956 786 SUPERFAMILY ArfGap/RecO-like zinc finger 475 598 IPR037278 -
Aip03g00956 786 MobiDBLite consensus disorder prediction 250 265 - -
Aip03g00956 786 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Aip03g00956 786 PANTHER CENTAURIN/ARF 3 755 IPR045258 GO:0005096
Aip03g00956 786 Gene3D - 614 770 IPR036770 -
Aip03g00956 786 SMART arf_gap_3 473 605 IPR001164 GO:0005096
Aip03g00956 786 ProSiteProfiles PH domain profile. 292 426 IPR001849 -
Aip03g00956 786 SUPERFAMILY BAR/IMD domain-like 8 315 IPR027267 -
Aip03g00956 786 SUPERFAMILY PH domain-like 288 425 - -
Aip03g00956 786 CDD BAR_SFC_plant 16 217 IPR035670 -
Aip03g00956 786 CDD ArfGap 477 592 - -
Aip03g00956 786 CDD PH_ACAP 295 430 - -
Aip03g00956 786 MobiDBLite consensus disorder prediction 440 461 - -
Aip03g00956 786 Gene3D Arf GTPase activating protein 463 604 IPR038508 -
Aip03g00956 786 Pfam PH domain 294 424 IPR001849 -
Aip03g00956 786 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Aip03g00956 786 Coils Coil 229 249 - -
Aip03g00956 786 Pfam Putative GTPase activating protein for Arf 476 597 IPR001164 GO:0005096
Aip03g00956 786 Gene3D - 287 438 IPR011993 -
Aip03g00956 786 ProSiteProfiles Ankyrin repeat region circular profile. 685 716 - -
Aip03g00956 786 ProSiteProfiles Ankyrin repeat region circular profile. 718 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00956 Aip-Chr3 9206371 9215243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00956 485 592 C2H2 Transcription Factor Family AT4G21160 40.909 3.82e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00956 K12489 - gmx:100796740 1236.48