Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00913 ATGGTGGTGGTGGTGACGGGGCTAGCATCGATGGAGGCCGAAGGCGACTGTGCTAAGAAACTCGTGCAGCTGCAGCAAATTCGAACCACGGATAGAGCAGATTTGGCAGTAGAGAGGAAGCAGGGGGCACCGTTTTGGGGTCAGGGCCAGCAGAACGTTGTTGGGTCACGGTTAAAAACACTGATTGATGAGAGAAGCAGAATCCCAGAGGCATCAACAACAGAAACAGAAACAGAAGAGAGGAGGCAGATAAGAGATACTATTGCGATGGATCATATTGTAAGATTAATGGCTCATCAGAGAGAACATCAAACAAGGCTGCAATTCAATGGTGATTCTGCTGTTATAACTATGGGTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTGTTGTTGAAGATAAAAGCAGTGGATGCTCCCCTCTTGAATGCTCTATTTGCATGGAAGTGTTTAAGGATGGGGAGTTGATTCAACCTCTTGGATTGTGTCCTCATCAGTTTCATTCTTCTTGTCTTTACTCTTGGCTTCATAGTGGAAAATCTACTTGCCCCCTTTGCCGTGTGGATTTAGCAACCGCATAG 588 0.4643 MVVVVTGLASMEAEGDCAKKLVQLQQIRTTDRADLAVERKQGAPFWGQGQQNVVGSRLKTLIDERSRIPEASTTETETEERRQIRDTIAMDHIVRLMAHQREHQTRLQFNGDSAVITMGRKALRVLPPVKSFVVEDKSSGCSPLECSICMEVFKDGELIQPLGLCPHQFHSSCLYSWLHSGKSTCPLCRVDLATA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00913 195 SUPERFAMILY RING/U-box 145 193 - -
Aip03g00913 195 Pfam Ring finger domain 145 189 IPR001841 -
Aip03g00913 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 194 IPR013083 -
Aip03g00913 195 PANTHER OS06G0666500 PROTEIN 100 192 - -
Aip03g00913 195 SMART ring_2 146 188 IPR001841 -
Aip03g00913 195 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 100 192 - -
Aip03g00913 195 ProSiteProfiles Zinc finger RING-type profile. 146 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00913 Aip-Chr3 8737435 8739372 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00913 106 189 C3H Transcription Factor Family AT2G17450 40.659 8.95e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00913 - K10664 aip:107632256 270.396