Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00909 ATGAGTAGGGTTTGCGGTAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTTGTTCATCAATCTTCGATTCGATCCGAAGGGTTTCGCAGCCTCGCCGAGGGTGAATCCGTTGAGTTCGCCATAGAGTCCGATCCTGATGGACGCACCAAGGCCGTTGATGTCACTGGACCTGATGGCTCTAACGTGCAGGGGAGTCGCCGTGGTGGAGGCGGTGGCGGAGGTGGTGGAAGGAGTTACGGCGGTGGACGAGGCGGCGGCGGCGGCTATGGTGGTGGATATGGTGGTGGAGGAGGATATGGTGAAGAATGA 348 0.5718 MSRVCGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFAIESDPDGRTKAVDVTGPDGSNVQGSRRGGGGGGGGGRSYGGGRGGGGGYGGGYGGGGGYGEE 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00909 115 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 110 - -
Aip03g00909 115 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Aip03g00909 115 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Aip03g00909 115 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Aip03g00909 115 SMART csp_8 5 70 IPR011129 GO:0003676
Aip03g00909 115 Gene3D - 1 81 IPR012340 -
Aip03g00909 115 MobiDBLite consensus disorder prediction 56 115 - -
Aip03g00909 115 PANTHER COLD SHOCK PROTEIN 2 2 110 - -
Aip03g00909 115 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
Aip03g00909 115 CDD CSP_CDS 6 69 IPR002059 GO:0003676
Aip03g00909 115 Pfam 'Cold-shock' DNA-binding domain 6 69 IPR002059 GO:0003676
Aip03g00909 115 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Aip03g00909 115 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00909 Aip-Chr3 8719174 8719749 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aip03g00909 CSD 3.2e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00909 - - adu:107476544 159.073