Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00889 ATGGGAAGGTCACCTTGCTGTGAGAAAGCACACACAAACAAAGGTGCATGGACGAAGGAAGAAGATGACAGGCTCATATCTTACATTAGAGCTCATGGTGAGGGTTGCTGGAGATCCCTTCCTAAAGCGGCGGGCCTTCTCCGGTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAAAGAGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTTGGTAACAAGTGGTCGCTTATAGCTGGAAGATTGCCAGGGAGAACAGACAATGAGATAAAGAATTATTGGAACACACACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCATAGGCCTCTCAATGATTCTTCTGCTTCACATCATCATCACAACAACCAAGAACAACAACAACAACAACAACAACAACAACCATCTTCTCTTGTTGCAGCAGCCACAACCACCACCATATCTTTTGCTTCTTCTGTTTCTGCTTCTGCTTCTGCTGTTAAACAAGAACAAGATACTATTACTACTACTACTGCTACTACCACTACTAGTGCTACTTGCAACGCAAACATGTTTGGGATTATGGAGAAGAAGAACAAGAAGGATTATTCAAAGGGATCATCAATGGAAAGGTGCCCTGACTTGAATCTTGAGTTGACAATTAGTCCTCCACGCCATCTTGATGAACCTGATCACCAGAAATTCAGTGGAATAGAGAGATCCCCTTGCTTTGTTTGCAGCTTGGGTTTGCAGAACAGCAAGGATTGCCGGTGTGGATTCGCCACTAATGCTAATGCTAATGGTGGCACTAATAGTAATGGCACCACCACCACCACCACCACTGCTACTGGTTCTGGTTATGATTTCTTGGGCTTGAAAACAGGTAGTGTTTGGGATTACAGAAGCTTGGAAATGAAGTGA 954 0.4507 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSASHHHHNNQEQQQQQQQQQPSSLVAAATTTTISFASSVSASASAVKQEQDTITTTTATTTTSATCNANMFGIMEKKNKKDYSKGSSMERCPDLNLELTISPPRHLDEPDHQKFSGIERSPCFVCSLGLQNSKDCRCGFATNANANGGTNSNGTTTTTTTATGSGYDFLGLKTGSVWDYRSLEMK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00889 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip03g00889 317 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 273 - -
Aip03g00889 317 CDD SANT 69 112 IPR001005 -
Aip03g00889 317 Gene3D - 69 156 - -
Aip03g00889 317 CDD SANT 16 61 IPR001005 -
Aip03g00889 317 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip03g00889 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip03g00889 317 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 273 - -
Aip03g00889 317 SMART sant 66 114 IPR001005 -
Aip03g00889 317 SMART sant 13 63 IPR001005 -
Aip03g00889 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip03g00889 317 Gene3D - 14 66 - -
Aip03g00889 317 MobiDBLite consensus disorder prediction 139 158 - -
Aip03g00889 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip03g00889 317 MobiDBLite consensus disorder prediction 122 158 - -
Aip03g00889 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip03g00889 317 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00889 Aip-Chr3 8503543 8505251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00889 1 317 MYB Transcription Factor Family AT4G38620 57.009 5.66e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g00889 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00889 K09422 - zju:107404478 353.214