Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00881 ATGACAGTTGAGAGAAGGTTTGTTTTGGTTGGGATTAGAATAGATAGCCATAGCAGACATCTCCTCAACTGGGCACTTTTTAAAGTTGCTGAACCTGGGGATTGTGTTATTGCACTCCACATAGTAAAAAATCCAGCTTATGTTTCCAAAAATCAGACTTTGATAGATGGATACTTAGAGGTTTATGAAGGACTATGTGATGTGAGGAAGGTAGGACTCACTGGTCAAATCCTGACAGGAAGTTCAATCAAAGACATTCTTGTTAGAGAAGCAAAAAACCATTCTGCTGTGGCTCTTGTGGTAGGGGGCCGAGCTGCCACAGCTAAATATTGTGCCAAACGACTTCCAACTACTACCAATGTTCTAGCCATTCAAGATTCAAGAATTGTCTTCAGAAGGTGCACCAATAAAGAACTACCACTATCAGGTGGTTTGCTAGTGGATCCAAGACCAAGCTTAAGCATAGAAAGCATGAGTGATAGAGTAGTTCAGTCAGAATTTGGTGACTCTGAGTTGGAGATTGAGAAATCAAGCCATTGGGGTACCAGGGAATCAAAGCAAGAATCGTTAAGCGGAACAGGGAAGTTCAAGACAAGGTCATTATCTATGTTTTCAGGTGATCCTGCTGAGCAGAAGCTTGGATGGCCTCTGCTCCTCAGAGCCAATTCAGAAATCTCACAAAACCTTCATGCAAGGGACATGTCGGTAGTGAAATGGGTGATGAGATTTCCGGATCGTTCGCCACATGGAAGTCCTCACTCTTCCATCGAGGAGGGAAACCTGTCTGAAAGAGGCATAAGTGATTTCGAGGATGAGAGCTCTAAAAATGGTTCACCTCTATCTTCTCAGCTACCAAAGGGAATAGAAGGGATGCTTAACCTCAATTCACTCAATTGCAAATGGTTCAGCCTTGAAGTTCTGAAGTCTTGCACTAGCCAATTTTCTTCAGAAAACTTGATTGGGAAAGGAGGGTGCAATCGTGTTTACAGAGGAACTCTCCCTGATGGAAAGCCAATTGCAGTTAAAGTTTTGCAGTCATCAAAAGAAGCACGGAAAGAGTTTGCCCTTGAGGTGGAAATAATATTATCACTGGAGCACAGAAACATCACTCCTCTGCTTGGAATTTGCATTGAGGACAGTGAGTTAATCTCTGTTTATGATTATTTCCCCAAAGGGAGCTTAGAGGAAAATTTACATGGAAGGAACAAGGATGGTCCCATCTTATCATGGGAATTAAGATTTAAAATAGCTCTTGGAATAGCTGAAGCCTTGGATTACCTGCACAGGGAAACTCTGAAGCCTGTAATACATAGAGATGTCAAGTCCTCAAACATTCTTCTTTCCCATGAATTTGAACCACAGTTATCTGATTTTGGGCTTGCAATATGGGGACCAACAACTACATCTTTTCTGACAGAAGAAGATGTTGTAGGAACATTTGGTTATCTTGCTCCTGAGTACTTCATGTATGGAAAAGTCAGTGACAAGATAGATGTTTATGCCTTTGGTATAGTGCTACTTGAACTCATATCAGGGAGGGAACCTATCAATCCTGAACCTTGCAAAGGACAGGAAAGCTTGGTGGTGTGGGCAAAACCAATCCTCGAGAGGGGGGATATAAAGGGCCTATTGGACCCAAGTTTAGAAGGGAAGTTTGATGAGGTCCAATTACAAAGAATGGTTCTGGCAGCATCTCTTTGCATTACAAGGGCTGCAAGGCTTCGTCCTAAAATGAACCAGATACTAAAGATCCTAAAAGGAGACAAGAAAGTTGAAGGTGTCCATAACTTGCAAGGGAATGATAATAATGATGAACATTCAGAAAATCAAGAAAACATTGATGATGAGGTCTACCCTTGCTCAAGTACAGAGTTACACCTTAGTCTTGCATTACTTGGTGTTGACGATGACACTACATCATTTAACAGTAGTGAACATCCAAAAGAACAATGGAGCAGGTCATCAAGTTTTGATTAG 1977 0.4168 MTVERRFVLVGIRIDSHSRHLLNWALFKVAEPGDCVIALHIVKNPAYVSKNQTLIDGYLEVYEGLCDVRKVGLTGQILTGSSIKDILVREAKNHSAVALVVGGRAATAKYCAKRLPTTTNVLAIQDSRIVFRRCTNKELPLSGGLLVDPRPSLSIESMSDRVVQSEFGDSELEIEKSSHWGTRESKQESLSGTGKFKTRSLSMFSGDPAEQKLGWPLLLRANSEISQNLHARDMSVVKWVMRFPDRSPHGSPHSSIEEGNLSERGISDFEDESSKNGSPLSSQLPKGIEGMLNLNSLNCKWFSLEVLKSCTSQFSSENLIGKGGCNRVYRGTLPDGKPIAVKVLQSSKEARKEFALEVEIILSLEHRNITPLLGICIEDSELISVYDYFPKGSLEENLHGRNKDGPILSWELRFKIALGIAEALDYLHRETLKPVIHRDVKSSNILLSHEFEPQLSDFGLAIWGPTTTSFLTEEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGIVLLELISGREPINPEPCKGQESLVVWAKPILERGDIKGLLDPSLEGKFDEVQLQRMVLAASLCITRAARLRPKMNQILKILKGDKKVEGVHNLQGNDNNDEHSENQENIDDEVYPCSSTELHLSLALLGVDDDTTSFNSSEHPKEQWSRSSSFD 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00881 658 SUPERFAMILY Protein kinase-like (PK-like) 296 585 IPR011009 -
Aip03g00881 658 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 3 642 - -
Aip03g00881 658 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Aip03g00881 658 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 106 - -
Aip03g00881 658 PANTHER OS08G0249100 PROTEIN 3 642 - -
Aip03g00881 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Aip03g00881 658 SMART serkin_6 314 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00881 658 Pfam Protein kinase domain 315 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00881 658 CDD USP_Like 8 104 - -
Aip03g00881 658 Gene3D Transferase(Phosphotransferase) domain 1 389 603 - -
Aip03g00881 658 ProSiteProfiles Protein kinase domain profile. 314 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00881 658 MobiDBLite consensus disorder prediction 639 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00881 Aip-Chr3 8414555 8418013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00881 302 614 Trihelix Transcription Factor Family AT1G70460 42.453 5.12e-78 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aip03g00881 Pkinase 6.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00881 - - gmx:100789189 978.778