Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00819 ATGTCGCCGTCGAACGGAAACAGCAGCAAGATCCGGCGAATAGTACGGATCCGGCAGATGCTAATGCGGTGGAGGAAGAAGGCGGCGGGTAGAGCGGCGGCGGACGTGCCGGCGGGACACGTGGCGGTGTGTGTTGGACCTAGCATGAGGAGGTTCATCGTGCGCGCGACGCAGTTGAATCACCCGATCTTCCAGAAGCTTCTGCTTCAAGCGGAAGAAGAATACGGTTTCTGTAACCATGGACCTCTCGCTATTCCTTGCGACGAAGGGCTATTCGAGGAGCTTCTTCGTGTCATGACCCGACCCGAATCCGTTTTCTCTGCTTCGCTCGAAGAGTTTCAGAGAAGGTGCCACGTGGACTTCCGAAGTAACGGCGATGGTAGTGGTAAAAAAGGTGGTGGTCGTGGAGAATCGTGGCCGTTGCTTCATGACGAGTTGATTTACTGA 447 0.5548 MSPSNGNSSKIRRIVRIRQMLMRWRKKAAGRAAADVPAGHVAVCVGPSMRRFIVRATQLNHPIFQKLLLQAEEEYGFCNHGPLAIPCDEGLFEELLRVMTRPESVFSASLEEFQRRCHVDFRSNGDGSGKKGGGRGESWPLLHDELIY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00819 148 PANTHER SMALL AUXIN-UP RNA-RELATED 6 129 - -
Aip03g00819 148 Pfam Auxin responsive protein 18 98 IPR003676 GO:0009733
Aip03g00819 148 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 129 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00819 Aip-Chr3 7992949 7993720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00819 6 124 Calmodulin-binding Proteins AT4G34750 52.273 5.57e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00819 K14488 - gmx:100795345 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00819 03 7992949 7993720 Aip03g00819 03 7992949 7993720 ECH