Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00790 ATGAAGATCCAGTGTGATGTGTGTCACAAAGTGGAGGCCTCTTTCTTCTGTCCCTCTGATGAAGCAGCTCTATGCCATGGCTGTGATCGCACAATACACTGTGCCAACAAGGTTGCAACCAAACACACGCGCTTCTCTCTGCACCACCCTAACTCCAAAGACGCCCCTCTTTGTGATATCTGCCAAGAGAGACGTGCATATATATTTTGCCAAGAAGATAGAGCGATACTATGCAGTGAATGTGACGTTTCTATCCATGGAGCCAATGAATACACTAAGAAGCATAACAGGTTTCTTCTGACAGGTGTAAAGCTTGGTGCTGCTTCTTCTTCTTCTTCATCAGAGCCAACATCAATGTCCTCGAGTAGAGCCACAACAAGCTCTGAAGCAGCAAATAACCAGAATAATAATAATTATTATATGGGTAGTGACACGGGTTCAGTTTCAACAAGCAGCATTTCTGAGTATTTGATTGAGACCATACCCGGTTACTGCATGGAAGACCTTCTCGATGCTTCATTTCCGCCAAATGGTTTCTGTAAGGAGTATGAGCAGCAATCATTGTTTCAGGACCGAAATAATGTTCATCACTATGTCAGCATGTGTTCGTTTCCATTGGAAGCATGGTCTCCATCATCAACCCCAACTTAG 651 0.4393 MKIQCDVCHKVEASFFCPSDEAALCHGCDRTIHCANKVATKHTRFSLHHPNSKDAPLCDICQERRAYIFCQEDRAILCSECDVSIHGANEYTKKHNRFLLTGVKLGAASSSSSSEPTSMSSSRATTSSEAANNQNNNNYYMGSDTGSVSTSSISEYLIETIPGYCMEDLLDASFPPNGFCKEYEQQSLFQDRNNVHHYVSMCSFPLEAWSPSSTPT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00790 216 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270
Aip03g00790 216 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Aip03g00790 216 CDD Bbox1_BBX-like 57 100 - -
Aip03g00790 216 Gene3D Classic Zinc Finger 1 97 - -
Aip03g00790 216 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 - -
Aip03g00790 216 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 187 - -
Aip03g00790 216 MobiDBLite consensus disorder prediction 108 138 - -
Aip03g00790 216 CDD Bbox1_BBX-like 5 47 - -
Aip03g00790 216 SMART bboxneu5 4 47 IPR000315 GO:0008270
Aip03g00790 216 SMART bboxneu5 53 100 IPR000315 GO:0008270
Aip03g00790 216 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00790 Aip-Chr3 7643905 7645549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00790 1 211 C2C2-CO-like Transcription Factor Family AT1G75540 43.922 3.22e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g00790 zf-B_box 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00790 - - gmx:100790232 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00790 03 7643905 7645549 Aip03g00790 03 7643905 7645549 ECH
Aip03g00790 03 7643905 7645549 Aip05g00885 05 12196072 12200144 ECH