Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00745 ATGGGCCACCGAACCGATAACAAAGCTCTAGAGAAAGCCTTCTCTGCCTACGGAGAAATCGTTGAATCGAAGGTTATCAACGATCGCGAAACTGGAAGATCCAGAGGTTTCGGATTTGTGACCTTTGCTTCTGAGCAAGCCATGAGGGATGCGATTGATGGCATGAACGGATCCAACCTTGACGGCCGTAACATCACTGTCAACGAGGCTCAGTCCCGTGGAGGTGGAGGAGGTGGTGGAGGTGGCTTCAGAAGCGGAGGCGGCGGTGGATATGGTGGTGGCAGATTTAGCCGCAGCGACGGTGGTGGTGGATACGGAGGTGGGGCCGTCATGAAGGTGGATAACGGTGGTGGCGGCGGTGTGGTGACTCCGATGGCAGCAGCTGGAGGAACTGATTTGTGA 402 0.5572 MGHRTDNKALEKAFSAYGEIVESKVINDRETGRSRGFGFVTFASEQAMRDAIDGMNGSNLDGRNITVNEAQSRGGGGGGGGGFRSGGGGGYGGGRFSRSDGGGGYGGGAVMKVDNGGGGGVVTPMAAAGGTDL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00745 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 72 IPR000504 GO:0003723
Aip03g00745 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 65 IPR000504 GO:0003723
Aip03g00745 133 PANTHER GEO13361P1-RELATED 4 119 - -
Aip03g00745 133 Gene3D - 1 120 IPR012677 -
Aip03g00745 133 MobiDBLite consensus disorder prediction 68 98 - -
Aip03g00745 133 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 4 119 - -
Aip03g00745 133 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Aip03g00745 133 SMART rrm1_1 1 68 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00745 Aip-Chr3 7151155 7152079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00745 5 67 Eukaryotic Initiation Factors Gene Family AT2G23350 46.032 6.52e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00745 - K13195 lja:Lj1g3v2296520.2 127.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00745 03 7151155 7152079 Aip03g00745 03 7151155 7152079 ECH