Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00742 ATGCTATTTTTGTGTCAAAAATGCAACCTTTACCTTCTTCCATTCTCCTCTGTACCATTCAAATCAAAGTCCATCTGCAACCAAACTTCAACTTCCACCATTCTCAACTGCCATAACCCACATTCCCAAGATGCCCCAGATGAACATCATCACAGCCCCGTTCACCGTAAACACAATTCCAAATCCACAAACTTTCTCCTTCAGAACCTTTCCCAGAACAACCAGAATCAGCAGCAACTCACTGCTTCCCAAAAGATTGAACTTGAAGAACACCCCATCATGCCCCACCAAGAAAAGGTGAAACTTTTGGAACTTTCCCTTGTTAGGAAGAGGACCCCTCAGTTCCCTGGTTCCATCTATGTTCAGTCCCCAAGTGACTCTGATGTGGGTTCTTCTCTTCCACCTATAAGAAACCTTTTTCAATCAAGTGTTGACAATGATGGTGATGGTGGTGGTGGTGGTGGTGATGGCCATGTTGATGAAGAAGAGGAGGAGATGATAATGCGTGCAGTTGAGATTCGTAGGAAGGTGACTTTGGAGATTTTCAAAGAAGCCATGATGAAGGAGGGCAGGTTTGGAATCACTTACACTACTAACTTGGCTAATAGGCTGCAAGGTTTCCTTGACTATGTTATGATTGAAGCTGCTAGCTTGAAGAGGATGCCAGAATATTATAACTCTAGTTTCAATTTGCGCTCCAAAGCCGTCATTGAGGACTCCCAGGTTGTGCCACTTATCAGATGGTTGAAGCATAATGAACTATCATATCCCCAGATATCAAAGCTCATTTTGTTGTCAAGAGGAAGAATTGATTTGATAAGGGACCGTGTCCAGTGGTTGAAGTCGAATCATGTGAAAGGGGAGTTCCTTGGGGTTGCACTTGTTAAGGGTGGTGAGAATATTTTGCACCGCAGCTATAAGGAACTTGACGAGATTGTAGAGTATCTGGTGTCCAATGGAGTTAGGAGAGACTGGGTGGGTTATGTCATTAGTCGATGTCCTCAATTGTTGTCGTACAGCTTAGAAGAAGTGAAGACTCGTGTGGCGTTCTATGTCGACATGGGTATGAATGAGAAGGATTTTGGCACAATGGTTTTTGATTTCCCCAGAGCACTTGGTTACTTAACTATGGAAGAAATGAACCAAAAGGTTAATTACTTGAAAGAATTTGGGCTTAAAAATGAGGATGTTGGCAAGTTGCTAGCATTTAGGCCACAATTGATGGGTTGTAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTCTACTATTATGGAATCACTAAAGATGGCATGAGGAGAATGCTTACCCTTAAACCAATGGTCTTTTGTACCGATTTGAAGTTGAATATTGTTCCAAAGGTAAAATTTTTTCAGGACATAGGGGTTAGAGATGATGCAGTTGGCAACATGCTTGTGAAGTTTCCTACTCTACTCACTTACAGCCTCAACAAGAAGATTAGGCCAGTGGTTATATTCTTGATGACCAAAGCTGGAGTAACTGAGAAAGATATTGCCAAGGTTGTAGCTCTGGGACCTGAGCTCTTGGGATGCAGCATTGTACAAAAGCTTGAAGTAAATGTTAAATATTTTTTGTCTCTTGGCATACACGTCCGGCAGCTAGGCGAGATGGTTGCTGATTTCCCATTGCTGCTCAGATACAATCCCGATGTCCTTCGGCCTAAGTATGTTTATCTGCGGCGAACCATGATCCGACCTTTGCAAGATATCATCGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGAAGGGCGAATTATCCCAAGACACAAGGTTCTTGTGGAGAATCAGCTTAATATTAAGCTGAGATACATGCTGGCTAGCAGTGACGTACAATTCAATAAACTGGTCAATGATCTCATCAGAAAGCGCAAAAAATTTCAGTCTGGTGTTGCCGGCGATGAGGAGGAAGAGACTCAATCCAGCGAAGAGGAGGAAGAGACTCAATCCGAGGCTGTTATTCCAGTGGATACTACTACTAAACTCCAAACATAA 2016 0.4251 MLFLCQKCNLYLLPFSSVPFKSKSICNQTSTSTILNCHNPHSQDAPDEHHHSPVHRKHNSKSTNFLLQNLSQNNQNQQQLTASQKIELEEHPIMPHQEKVKLLELSLVRKRTPQFPGSIYVQSPSDSDVGSSLPPIRNLFQSSVDNDGDGGGGGGDGHVDEEEEEMIMRAVEIRRKVTLEIFKEAMMKEGRFGITYTTNLANRLQGFLDYVMIEAASLKRMPEYYNSSFNLRSKAVIEDSQVVPLIRWLKHNELSYPQISKLILLSRGRIDLIRDRVQWLKSNHVKGEFLGVALVKGGENILHRSYKELDEIVEYLVSNGVRRDWVGYVISRCPQLLSYSLEEVKTRVAFYVDMGMNEKDFGTMVFDFPRALGYLTMEEMNQKVNYLKEFGLKNEDVGKLLAFRPQLMGCSIEEQWKPLVKYFYYYGITKDGMRRMLTLKPMVFCTDLKLNIVPKVKFFQDIGVRDDAVGNMLVKFPTLLTYSLNKKIRPVVIFLMTKAGVTEKDIAKVVALGPELLGCSIVQKLEVNVKYFLSLGIHVRQLGEMVADFPLLLRYNPDVLRPKYVYLRRTMIRPLQDIIEFPRFFSYSLEGRIIPRHKVLVENQLNIKLRYMLASSDVQFNKLVNDLIRKRKKFQSGVAGDEEEETQSSEEEEETQSEAVIPVDTTTKLQT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00742 671 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 77 645 - -
Aip03g00742 671 SMART mt_12 362 393 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 470 502 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 507 538 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 292 322 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 543 573 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 327 357 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 SMART mt_12 575 606 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 MobiDBLite consensus disorder prediction 643 658 - -
Aip03g00742 671 MobiDBLite consensus disorder prediction 633 671 - -
Aip03g00742 671 PANTHER CGI-12 PROTEIN-RELATED 77 645 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 MobiDBLite consensus disorder prediction 140 160 - -
Aip03g00742 671 Pfam mTERF 354 620 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 Pfam mTERF 297 448 IPR003690 GO:0003690|GO:0006355
Aip03g00742 671 MobiDBLite consensus disorder prediction 39 60 - -
Aip03g00742 671 Gene3D Transcription termination factor 3, mitochondrial 403 628 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00742 Aip-Chr3 7114087 7117163 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip03g00742 mTERF 4.8e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00742 K15032 - zju:107426883 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00742 03 7114087 7117163 Aip03g00742 03 7114087 7117163 ECH