Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00697 ATGGAAGATTACGCTGCCAGCAGCGATGACGAATACCGTTACTCCGATCCGGAGGACTCCGTCGACGCCTTCGATAACGATGATAACGATTATCAATTAGTCTCTTCTAAGGGTCCCTCTACTCAGGTGATTACGAAGGAGTCATTGCTAGCTGCACAGAAGGAGGATTTGCGCAGGGTGATGGACATGCTATCGGTGAGGGAGCAACATGCACGTACCCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCCGTGTATGTAGATAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAACATCGCGACTCTAATTCGTCAGCTGCTCCTTCGACAATAATGTGCGAAATTTGCATAGAAGATGTTCCTAGTGATGAAACAACAAAAATGGACTGCGGTCACTGTTTTTGCAACGGCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGAATCAGATGCATGGCACACAAATGTTATTCCATTTGTGATGAAGCTGTTGTCAGAACTCTTCTCAGCAAAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGTCCTAGTACGCCTCATTGTGGGAATGCAATACGTGTTGAGGACGATGAATTGTGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGCTTTAGTTGCTTGTCAGAAGCACATTCCCCATGCTCATGTTTGATGTGGGAGCTTTGGGCCAAAAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACCAAGCCTTGTCCAAAGTGCCACAAACCGGTCGAGAAAAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACTGGTCGAGAGCATACCTGGTCAAGCATTGCTGGTCATAGCTGTGGTCGCTATAAAGAGCAAGAAAAAACAGCTGAACGGGCAAAGAGGGATCTGTATCGTTATATGCATTATCATAATCGTTACAAAGCTCACACAGATTCCTTTAAGCTTGAGAGTAAACTGAAGGAGACTATACAAGAGAAGATTGCTGTCTCAGAAGAAAAAGATTCTACGCTAAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCGTTTTACATGTTTGGTGACGAGCTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTGTTTGAGGATCAGCAGCAGCAGCTTGAGGCAAACGTTGAAAAGCTCTCCAAAATTTTAGAGGAGCCTTTTGAAACTTTTGAAGATGATAAAGTCATGGAGATAAGGATGCAGATAATCAATCTGACCACTATCATTGACAAACTCTGTCAAAAAATGTATGAGTGTATTGAGAATGATTTACTGGGTTCTCTCCATATTGGTGTTCACAACATTGCTCCATACAAGTCAAAGGGGATTGAGAAGGCATCAGAACTTTCAGTTTGTTGGACAAATGAGGCCAATAATACCGGTAAGTTTCTATTGCAGTTTCTTGAATAG 1629 0.4162 MEDYAASSDDEYRYSDPEDSVDAFDNDDNDYQLVSSKGPSTQVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDRGKHFLFSEAGVTVDEHRDSNSSAAPSTIMCEICIEDVPSDETTKMDCGHCFCNGCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQEKIAVSEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFEDDKVMEIRMQIINLTTIIDKLCQKMYECIENDLLGSLHIGVHNIAPYKSKGIEKASELSVCWTNEANNTGKFLLQFLE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00697 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 208 IPR013083 -
Aip03g00697 542 Pfam Ariadne domain 332 534 IPR045840 -
Aip03g00697 542 ProSiteProfiles Zinc finger RING-type profile. 122 170 IPR001841 -
Aip03g00697 542 SMART ibrneu5 193 255 IPR002867 -
Aip03g00697 542 SMART ibrneu5 263 328 IPR002867 -
Aip03g00697 542 Gene3D - 251 498 - -
Aip03g00697 542 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 506 - -
Aip03g00697 542 SUPERFAMILY RING/U-box 118 205 - -
Aip03g00697 542 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 506 IPR031127 GO:0004842|GO:0016567
Aip03g00697 542 SUPERFAMILY RING/U-box 193 261 - -
Aip03g00697 542 SUPERFAMILY RING/U-box 263 320 - -
Aip03g00697 542 MobiDBLite consensus disorder prediction 1 27 - -
Aip03g00697 542 ProSiteProfiles TRIAD supradomain profile. 118 332 IPR044066 -
Aip03g00697 542 Pfam IBR domain, a half RING-finger domain 193 255 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00697 Aip-Chr3 6725648 6729593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00697 61 522 ARIADNE family AT2G16090 73.978 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00697 K11968 - gmx:100783343 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00697 03 6725648 6729593 Aip03g00697 03 6725648 6729593 ECH