Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00680 ATGCCACCTTCTTCTTCTCATCATTGGATATGGCCTCCAACACCATCTCCATCTCCATCTCCATCTCCATCCGCCACCTTCACCAAGTCAACGCTGCCGCCACCGTCACCTTCTAAGTCTCCGGTGGACTTCAGCCCTCCCCTCATAGCAATGGTTGTTGTCATCGCCGCCGCCTTCCTCCTCGTTACATACTCCCGTCTCATAGCCCGCCACCTCACTCCTCCACTCCACCGCCTCATAAGACGCTTCCGCCGTCGCCGCCGCACTCATTCCTTCCTCCCTTCCTCCTCCGGCGACCTAGACTCCCTCCCTTACTACtacgactcccccttcgaccctcatatcccaccttcctccttctccccttacggcctcgacgactccgtcatcaaaaccatccctttctccctttacgccgccctatacgccggcgaactcaacagcacctcctctcgccgttcatcttcacgccgcgactgcgccgtttgcctcttcgaattcgaagacgatgattacgttcgaaccttgcctctttgctcacacaccttccatgttgattgcatcgatgcttggcttcgttcccacgcaaactgccctctctgccgcgccggggttctctccgccgcctcgccgtttactcccatgttcgccgctaggattcgaccaagtctcgacgacgatgCCATCTTCCACCGGATAGCGGCGGAGCACACTCCGCCTCCTCCGGAGGACTATCGTCATGCTACGGCGACGGTTTCGGCGGCGCCGGAGATTACCGTGGAAGTTCCGGAGGAGGGGTTCAACGGGAGGGACTTTCTATTGAAACGTTCTTATTCGTTTGGGTTCGAAAGGAGCTTGGCGTCGGAGAGGATGTTGGTAATGGAGCCGGCGACGGCGTCCCCGTGGCGGTACCGGAGAGGAGGGAGCAGCAGCAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGATCTATTGGGAAGCCGAGGGTGTTCTCTTTCAGATACTACAGAGGGATGAAGTCACCATTTTTCCGGCGAAGAGGGTTTTTTCCGTTGTCGGAGTCAAGCATGAGGTACGCCGGTGGCGGGAGCTCGTCGCGGCGGAGTAAGTCCATCGCTAGCCCCATGTTCTTAAGGTCTTCCGTATTGACCTCGGCAGCTGGCGCGGCGGGGTTTTCGTCGAGCCGGCTGAGATGCGGCGATCCCGAGGCACTGCTTTCGCCGGAGAGGTTCAACAGAAGATGA 1242 0.4138 MPPSSSHHWIWPPTPSPSPSPSPSATFTKSTLPPPSPSKSPVDFSPPLIAMVVVIAAAFLLVTYSRLIARHLTPPLHRLIRRFRRRRRTHSFLPSSSGDLDSLPYYYDSPFDPHIPPSSFSPYGLDDSVIKTIPFSLYAALYAGELNSTSSRRSSSRRDCAVCLFEFEDDDYVRTLPLCSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDAIFHRIAAEHTPPPPEDYRHATATVSAAPEITVEVPEEGFNGRDFLLKRSYSFGFERSLASERMLVMEPATASPWRYRRGGSSSSFWSKRPSPFGSIGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVLTSAAGAAGFSSSRLRCGDPEALLSPERFNRR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00680 413 Pfam Ring finger domain 159 202 IPR001841 -
Aip03g00680 413 SUPERFAMILY RING/U-box 159 208 - -
Aip03g00680 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 206 IPR013083 -
Aip03g00680 413 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 382 IPR044675 -
Aip03g00680 413 SMART ring_2 160 201 IPR001841 -
Aip03g00680 413 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Aip03g00680 413 MobiDBLite consensus disorder prediction 1 38 - -
Aip03g00680 413 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 382 - -
Aip03g00680 413 CDD RING-H2_PA-TM-RING 159 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00680 Aip-Chr3 6633710 6637931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00680 38 413 C3H Transcription Factor Family AT3G18930 52.525 2.26e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00680 - K19041 gmx:100795347 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00680 03 6633710 6637931 Aip03g00680 03 6633710 6637931 ECH