Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00665 ATGCCTCGCCCTTCTTTCCATAAGGTTATTCTAACCACCACTCTCCAATCCAAGCAACTGAGAGTACCAGATAATTTTCTGAGAAAATATGGGGGTGAGCTTTCCTCCTTTGTTAACCTGTCTGTTCCCGATGGTAGTTCGTGGCGTGTGGGACTGAAAAAGGTAGACAACAAATTTTGGTTCATTGATGGTTGGGCAGAATTTGTTCAGCGCTATTCCATCGGTGTTGGATACCTTTTAGCTTTCAGATACGAAGGAAAGTCGAATTTCAGTGTTCACATTTTTAATTTGGCTACTGCTGAGATAAATTATCAATCACCCACACGAAGCAGCAATGAAGGATCTTACTTTGCGAATTGCCTCAAAATTTTTGAAGAAATGGAAGATGAAGACTTCACTGAATCCAAACCAGCCTTGCAGAATCTATTTAACGGGTCCAAACTTAATAGTGTAAACTGGGATAATATATATTTTAAATTCTTATTTTTTGCAAAACCGCATCTGATCTTGTTATTCTTCCTCTCCAGTTTTGCATCATCAACGTTGAAAGAAAGCACCTTTGTGCAGATCTGGACAATATTTTTTTCCAGGCAGATCAAGAACTTCGATATACACTTTTTTGATATGATGAATACTTCAGCTGAGCAATCCTCCTTCTTCAAAGTCTTCCTTCCACAGTTTAGCTCTGAAAAATTGCTACTCCCAGAAGAGCATGTGGCATTGACAAGGATGAAAGAAAGGGTACCTGAGGAATTCATACTGAGAAATGGAAGAGGAGGAGCATGGAGGGTGAAGACAAGTTGCATTGGTGAGAAGGTGTGTTTTGATGATGGATGGAAGGAGTTTGTAAGTGATAATGGTATACAAGAAGCTTGTGTTATTATTGTTTTCAATCCGGATGGAAGCAGCACATTCGAGTTCAAGATCTTTGAAAAATCAATGTGTGAAAAGACACAAACGTTGGAGGAGGAGGCGGCAGTGGAGATGGAGGAGTCATCAGAAGGAGAAGAAGAAAATGATGATGATGATGATGATGAAGATTATGAGGATGAGGATGAGGATGAGGACGAGGATGAGGACGAGCATAGAGCTGGGAAAGCTCCTGCAAAAAGGGAAAGGGGAAATTACAATGATATTAAGGAGTATGGAGAAATTATTGCAACTTATATTGATCAACACAATCCATACTTTGTTGCCAAAATGAACAAATCCAGACCCAATGAATTGCATGTTCCATGTAAGCTCATTAAGGAGTACTCCATTACCATCCCAGAAACTATTAAACTATGTTGCAAGATATCAATGATGGCTGCAGCATCAGCAATAATGTCTACTTCTACAATGATGGGAAATGCTACTGTTTGCACCACAAGGAGGAGGAAGAGAAGTGTTCACTACGTTGCAGGGTTGAATTCTTTTGGAGGATTGAAGGTGCAGAACAATGTCACCTCATTAGGCCATTCATTGTGCACTGAACAATCCTTTGCAAAGGTTGTGAGCTCATTGAAGGGAAAATCCAAAGGTGGTGGTGGTGGAGGAGGAGGAGCTGCATCTTCAACATGCAATGCTGCAGGTGAGATTTTCCAGATTGCAGCCATCATGAATGGACTTGTTCTTGTTGGTGTTGCTGTTGGATTCGTTCTTCTTCGAATCGAAGCATCTCTGGAAGTGGCTGCTGAGTGA 1683 0.4088 MPRPSFHKVILTTTLQSKQLRVPDNFLRKYGGELSSFVNLSVPDGSSWRVGLKKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNFSVHIFNLATAEINYQSPTRSSNEGSYFANCLKIFEEMEDEDFTESKPALQNLFNGSKLNSVNWDNIYFKFLFFAKPHLILLFFLSSFASSTLKESTFVQIWTIFFSRQIKNFDIHFFDMMNTSAEQSSFFKVFLPQFSSEKLLLPEEHVALTRMKERVPEEFILRNGRGGAWRVKTSCIGEKVCFDDGWKEFVSDNGIQEACVIIVFNPDGSSTFEFKIFEKSMCEKTQTLEEEAAVEMEESSEGEEENDDDDDDEDYEDEDEDEDEDEDEHRAGKAPAKRERGNYNDIKEYGEIIATYIDQHNPYFVAKMNKSRPNELHVPCKLIKEYSITIPETIKLCCKISMMAAASAIMSTSTMMGNATVCTTRRRKRSVHYVAGLNSFGGLKVQNNVTSLGHSLCTEQSFAKVVSSLKGKSKGGGGGGGGAASSTCNAAGEIFQIAAIMNGLVLVGVAVGFVLLRIEASLEVAAE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00665 560 SMART B3_2 6 98 IPR003340 GO:0003677
Aip03g00665 560 SMART B3_2 219 313 IPR003340 GO:0003677
Aip03g00665 560 SUPERFAMILY PetM subunit of the cytochrome b6f complex 524 556 - -
Aip03g00665 560 CDD B3_DNA 218 310 IPR003340 GO:0003677
Aip03g00665 560 Gene3D - 1 98 IPR015300 -
Aip03g00665 560 Gene3D - 209 315 IPR015300 -
Aip03g00665 560 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 142 - -
Aip03g00665 560 MobiDBLite consensus disorder prediction 325 360 - -
Aip03g00665 560 SUPERFAMILY DNA-binding pseudobarrel domain 215 315 IPR015300 -
Aip03g00665 560 Pfam PetM family of cytochrome b6f complex subunit 7 525 552 IPR012595 GO:0009512
Aip03g00665 560 ProSiteProfiles B3 DNA-binding domain profile. 217 313 IPR003340 GO:0003677
Aip03g00665 560 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Aip03g00665 560 PANTHER B3 DOMAIN-CONTAINING 1 142 - -
Aip03g00665 560 Hamap Cytochrome b6-f complex subunit 7 [petM]. 523 554 IPR012595 GO:0009512
Aip03g00665 560 MobiDBLite consensus disorder prediction 322 372 - -
Aip03g00665 560 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Aip03g00665 560 Pfam B3 DNA binding domain 14 95 IPR003340 GO:0003677
Aip03g00665 560 Pfam B3 DNA binding domain 219 312 IPR003340 GO:0003677
Aip03g00665 560 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00665 Aip-Chr3 6532320 6539810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00665 1 131 B3 DNA Binding Superfamily AT3G18990 58.779 1.63e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip03g00665 B3 1.7e-10 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00665 03 6532320 6539810 Aip03g00665 03 6532320 6539810 ECH