Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00664 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTTCCTTCCACCATTCAATCTAGGCAATTGAGGATTCCAGATACTTTTCTGAATAGATATGGAGCTGACCTTTCTTCAATTGCTACCTTCTCGGTTCCTGATGGCAGCATTTGGCGTGTCAGATTAAAGAAGTTGGACAATGGATTTTGGTTTGTTGATGGCTGGGCAGAATTCGTTCAACGCTACTCCATCGGTGTTGGATACTTGATAGTATTCCGATACGAAGGAAAGTCGACTTTCATTGTTCGTATCTTTAATTTGGCCACTTCTGAGATAAGCTATCAGTCGCCTGTACGAAGCAGTAACGAAGGGGCTTACTTTGCAAACCGTCTTAAGATTTTTGAAGAATTGGAAGATGAAGACTCCGCTGAATATTCATCACCTTCCGGCCTTACTCCCGGTGCATTGCAAAATAAATTTACCCCTGAGAAGAATTATACTCCTCCACCATTGCAGAATCTATTTAATGGGTCCAAACTTAATAGTGTAAACTGGGGCGATAGTGCAAACACCCTCTCTTCAAGAAGTGCCAATTCGCTAGACAGTCAGTTGACCAGAGATATAGGTGTTCAGTTTAATGCAATTGAGTTTAAAAGGTCTACCGACGAATTGAAGTTGCGTACTTCTGTTGACGAAAAGGAGAAGAAAGCTCCAAGAAAGAAGCGAAAATCAGATGGCCAGGAACCCTCTGAGCACCAAGAAGAGGAGGCAGAGATGCGGTTTAGATTCTATGAAAGTGCATCGGCAAGAAAAAGAACTGTGACAGCAGAGGAAAGAGAAAGAGCCGTGAATGCAGCGAAGGCGTTCGAACCACTTAATCCTTTCTGTCGTGTTGTCCTGCGGCCGTCCTACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTCGCGGAAAAGCATTTGAATGAGGTTTCAGGATTCATCAAACTTCAGCTCTCCGACGGGAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGCAGAGCTAAGCTGAGCCAGGGGTGGTTTGAATTCGCGATAGAGAACAACCTTGGCGAGGGAGACGTCTGTGTGTTTGAGCTCCTTCCGATGAAGGAGGTGATACTTCAAGTTACACTGTTTCGCGTCACTGAGGACGATGGATTCTTCCTCCCTCCTCCTCTGCCCCAGCCGAGCCAAAATCTCGTGAGTCAATCTAAAATGTTGAACGCTCACATGCATCAGCGCCTCGGCTCAGGTAAACTGATCAGGAACTAA 1269 0.4578 MPRPSFHKLVLPSTIQSRQLRIPDTFLNRYGADLSSIATFSVPDGSIWRVRLKKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTFIVRIFNLATSEISYQSPVRSSNEGAYFANRLKIFEELEDEDSAEYSSPSGLTPGALQNKFTPEKNYTPPPLQNLFNGSKLNSVNWGDSANTLSSRSANSLDSQLTRDIGVQFNAIEFKRSTDELKLRTSVDEKEKKAPRKKRKSDGQEPSEHQEEEAEMRFRFYESASARKRTVTAEERERAVNAAKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFRVTEDDGFFLPPPLPQPSQNLVSQSKMLNAHMHQRLGSGKLIRN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00664 422 CDD B3_DNA 284 379 IPR003340 GO:0003677
Aip03g00664 422 MobiDBLite consensus disorder prediction 218 247 - -
Aip03g00664 422 PANTHER B3 DOMAIN-CONTAINING 1 412 - -
Aip03g00664 422 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Aip03g00664 422 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Aip03g00664 422 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 412 - -
Aip03g00664 422 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Aip03g00664 422 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Aip03g00664 422 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Aip03g00664 422 SMART B3_2 6 98 IPR003340 GO:0003677
Aip03g00664 422 SMART B3_2 286 381 IPR003340 GO:0003677
Aip03g00664 422 Gene3D - 263 383 IPR015300 -
Aip03g00664 422 Gene3D - 1 98 IPR015300 -
Aip03g00664 422 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Aip03g00664 422 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00664 Aip-Chr3 6526504 6529890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00664 1 385 B3 DNA Binding Superfamily AT3G18990 50.895 9.74e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip03g00664 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00664 - - adu:107476734 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00664 03 6526504 6529890 Aip03g00664 03 6526504 6529890 ECH