Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00655 ATGCTGTATTTTCCTATGGATTTAAACACTTCTTACTCAGATTGGTTATTTTCTGTGCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCGTGCGCATAGTTTGCCACTAGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGACTAAAGATGGGCGTAAAATTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATACAAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATCCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCCGCCGTTGCAATCAGGCTAAGGAGTATACATACCAATGATGATGATTATATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTGAAGAACAGCAACTTTTATTAGACAATCTAGCAGGTACTATGCAGAGAAAGTGTCAGACTTTGAGGAAAGTTTCGGATGCTGAATTACATGGGATAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCAATGTCCGTGACAAACAATGAAACGGAAGCTGCTCATAACCAGGCAATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATTTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAATCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAACAAAGTGAATCGCTCGTTAAAGAAAATACAAACCGTGCTCGACTCGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGTCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCAGCAAAAGATGCAGTCACCATATCTCCGGCATCCGGTAGCAAAGATTCAAAGCCAATAGCCATGGGTGATGGTGGATTACGCCAAGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATGTAGCATATCACAGTCCAAACTCCCTGGTTGCCGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGACAGACTCGTCGAGTGGCTCTTGCTCAATTTTGCGCCCCAGCTCATCTGGCTCTCCGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTCGTAGGGGATCAAAAATTATTGTCAAAGCTGCCTACGGAGAAAATATTATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACAAATCGGATCTTTCCAACTCGAGTATCTCGACGATGAAGACGAATGGGTGAGGATGGTAACTGACACAGATTTGGAAGAATGCATAGAAATGTTTGATGATCTTGGCACCGCTGTGAAATTTCTTGTTCGCGAGCCGTGCAGTAACAGTTGA 1740 0.427 MLYFPMDLNTSYSDWLFSVQCLSNNKRAALTEIIDVLRAVCRAHSLPLALTWIPCYYSEGIGDEASRIRTKDGRKIPGEKTVLCIEESACYTNDIVVGGFVRACVEHYLEEGQGVAGKALQSNRPFFYPDVKAYNISEYPLVHHARKYKLNAAVAIRLRSIHTNDDDYIIEFFLPVNMNGSEEQQLLLDNLAGTMQRKCQTLRKVSDAELHGIEGSSFCSMSRGNSHMAPDGDHDSVQPMSVTNNETEAAHNQAMEGSRKQIEKKRSPVKKNFSLSVLQQYFSGNLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSGVEGGLKFDPYKGGFMSGGSSNQEINAHKSSLFRKKCSVKYPDPAAKDAVTISPASGSKDSKPIAMGDGGLRQEPFPVSILESSRCDVAYHSPNSLVADEMETYLNGADKLGEHHNPTTSSMTDSSSGSCSILRPSSSGSPKFENRKHLKAKSPCVRRGSKIIVKAAYGENIIRFKFDPAAGCLQLYEEVATRFKLQIGSFQLEYLDDEDEWVRMVTDTDLEECIEMFDDLGTAVKFLVREPCSNS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00655 579 PANTHER PROTEIN NLP8 19 393 IPR045012 GO:0003700
Aip03g00655 579 ProSiteProfiles PB1 domain profile. 494 576 IPR000270 GO:0005515
Aip03g00655 579 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 19 393 - -
Aip03g00655 579 MobiDBLite consensus disorder prediction 383 402 - -
Aip03g00655 579 ProSiteProfiles RWP-RK domain profile. 252 341 IPR003035 -
Aip03g00655 579 SMART PB1_new 494 575 IPR000270 GO:0005515
Aip03g00655 579 Pfam PB1 domain 497 569 IPR000270 GO:0005515
Aip03g00655 579 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 393 576 - -
Aip03g00655 579 Pfam RWP-RK domain 273 320 IPR003035 -
Aip03g00655 579 Gene3D - 491 570 - -
Aip03g00655 579 PANTHER PROTEIN NLP8 393 576 IPR045012 GO:0003700
Aip03g00655 579 MobiDBLite consensus disorder prediction 446 473 - -
Aip03g00655 579 MobiDBLite consensus disorder prediction 444 478 - -
Aip03g00655 579 SUPERFAMILY CAD & PB1 domains 490 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00655 Aip-Chr3 6374443 6376485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00655 20 574 NLP Transcription Factor Family AT3G59580 47.635 1.10e-160 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip03g00655 PB1 1.6e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00655 - - aip:107632301 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00299 08 2232193 2236474 Aip03g00655 03 6374443 6376485 PCT