Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00654 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTATTGGACACCTCCTGGCGCTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTGAAAATTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTAAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCGCTTCAATCAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCATTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCATTATGAATGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGATAGTTTCAGATGATGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTTCTCTATGTATAGGGGAAATTCTCATATGGCGCCGGAAGGTGACCATGATTCGGTCCAGCCTATGTCCTTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGACTGAGAAAAAGAAAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATATTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATCGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTTCAAGGGGGGATTTATTCCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGGAAAATATCCTGATCCCGCAGCAAAAGATGCAGTCACCGTATCTCCGGCATCTGGTAGCAAAGATTCAAAACCAATAGGCATGGATGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGCATATCACAGTCCAAACACCTTGGTTGCCAATGAGATGGAAAATTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCGCTACTTCAAGCATGTCAGACTCGTCAAATGATTCTAAATCTATAATCACAATCACAATTACAAATAAATAA 1341 0.4124 MEDQFFSEGEGIGYWTPPGAQFDGPSMIDNGIKNLKIPGEKTVLCIEESACYINDIVVGGFVRACVKHYLEEGQGVAGKALQSNRPFFYSDVKAYNISEYPIVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVIMNGSQEQQLLLDNLSDTMQRMCQSLRIVSDDELYGIEGSQVQFSKEEGSSFFSMYRGNSHMAPEGDHDSVQPMSLTNNETEAAHNQAMDGSRKQTEKKKSTVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPFKGGFIPGGSSNQEINAHKSSLFRKKCSGKYPDPAAKDAVTVSPASGSKDSKPIGMDDGGLRQEPFPVSILESSRCDIAYHSPNTLVANEMENYLNGADKLGEHHNPATSSMSDSSNDSKSIITITITNK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00654 446 MobiDBLite consensus disorder prediction 414 446 - -
Aip03g00654 446 Pfam RWP-RK domain 243 291 IPR003035 -
Aip03g00654 446 ProSiteProfiles RWP-RK domain profile. 223 311 IPR003035 -
Aip03g00654 446 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 38 366 - -
Aip03g00654 446 PANTHER PROTEIN NLP8 38 366 IPR045012 GO:0003700
Aip03g00654 446 MobiDBLite consensus disorder prediction 422 446 - -
Aip03g00654 446 MobiDBLite consensus disorder prediction 350 377 - -
Aip03g00654 446 MobiDBLite consensus disorder prediction 218 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00654 Aip-Chr3 6368994 6370651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00654 39 335 NLP Transcription Factor Family AT2G43500 59.804 3.36e-112 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip03g00654 RWP-RK 4.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00654 - - aip:110269345 861.677