Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00651 ATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTCACGAGCTGTGTGTCGTGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGTGTAAAATTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCGCTTCAATCAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCATTATGAATGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGATAGTTTCGGATGATGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTTCTCTATGTCTAGGGGAAATTCTCATATGGCGCCGGAAGGTGACCATGATTCGGTCCAGCCTATGTCCTTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGACTGAGAAAAAGAAAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATCGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATTCCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGGAAAATATCCTGATCCTGCATCAAAAGATGCAGTCACCGTATCTCCGGCATCTGGTAGCAAAGATTCAAAGCCAATAGGCATGGATGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGTATATCACAGTCCAAACACCCTGGTTGCCGATGAGATGGAAAATTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGTCAGACTCGTCAAATGGCTCTGGCTCTCGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAAGGGATCAAAAATTATTGTCAAAGCTGCCTACAAAGAAGATATGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAACAAGTTGCAACAAGATTTAAATTACAAATCGGATCATTCCAGCTGAAGTATCTCGACGATGAAGAGGAATGGGTGAGGATGGTAAATGACTCAGATTTGGAAGAATGCATAGAAATATTGGATGATCTTGGCACCCGTGCTGTGAAATTTCTTGTTAGCGACATGCCTAGTGGTTTGAGCAGCAGTGGCAGTAACAGTTGA 1722 0.4199 MSQCLSNNKRAALTEIIDVSRAVCRAHSLPLALTWIPCYYSEGIGDEASRIRIKDGCKIPGEKTVLCIEESACYINDIVVGGFVRACVEHYLEEGQGVAGKALQSNRPFFYSDVKAYNISEYPLVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVIMNGSQEQQLLLDNLSDTMQRMCQSLRIVSDDELYGIEGSQVQFSKEEGSSFFSMSRGNSHMAPEGDHDSVQPMSLTNNETEAAHNQAMDGSRKQTEKKKSTVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYKGGFIPGGSSNQEINAHKSSLFRKKCSGKYPDPASKDAVTVSPASGSKDSKPIGMDDGGLRQEPFPVSILESSRCDIVYHSPNTLVADEMENYLNGADKLGEHHNPTTSSMSDSSNGSGSRKFENRKHLKAKSPCVDKGSKIIVKAAYKEDMIRFKFDPAAGCLQLYEQVATRFKLQIGSFQLKYLDDEEEWVRMVNDSDLEECIEILDDLGTRAVKFLVSDMPSGLSSSGSNS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00651 573 SMART PB1_new 480 562 IPR000270 GO:0005515
Aip03g00651 573 SUPERFAMILY CAD & PB1 domains 476 564 - -
Aip03g00651 573 MobiDBLite consensus disorder prediction 371 398 - -
Aip03g00651 573 MobiDBLite consensus disorder prediction 436 466 - -
Aip03g00651 573 Pfam PB1 domain 483 560 IPR000270 GO:0005515
Aip03g00651 573 Gene3D - 477 563 - -
Aip03g00651 573 Pfam RWP-RK domain 265 313 IPR003035 -
Aip03g00651 573 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 388 573 - -
Aip03g00651 573 MobiDBLite consensus disorder prediction 240 261 - -
Aip03g00651 573 ProSiteProfiles PB1 domain profile. 480 562 IPR000270 GO:0005515
Aip03g00651 573 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 388 - -
Aip03g00651 573 PANTHER PROTEIN NLP8 3 388 IPR045012 GO:0003700
Aip03g00651 573 ProSiteProfiles RWP-RK domain profile. 245 333 IPR003035 -
Aip03g00651 573 MobiDBLite consensus disorder prediction 441 458 - -
Aip03g00651 573 PANTHER PROTEIN NLP8 388 573 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00651 Aip-Chr3 6347946 6350127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00651 3 570 NLP Transcription Factor Family AT2G43500 48.852 2.88e-170 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip03g00651 PB1 4.1e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00651 - - aip:107632302 1122.84