Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00642 ATGCCGCGTCCGGCGAAATCAGTGAGGCCGTCGCACGAAGGAAGCGCCGCCGCCAGGGATTCCGACGAACCTTCCAACAACCTCTGGGTTGGGAATCTAGCGCCGGACGTAACCGACGCTGATCTGATGGACCTGTTCGCGCAATACGGCGCCCTCGACAGTGTCACCTCTTACTCTGCGCGTAGCTACGCCTTCGTGTACTTCAAGCGCGTGGAGGACGCTAAGGCCGCGAAGAACGCTCTCCAAGGGTTCTCCCTCCGCGGCAATTCCTTGAAAATCGAGTTTGCCAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTGACAAAGGAAGAATTAGAAGCCGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTTTTCAGGGACCGAAATACTGCATGTATTGAATTTTTCAATCTGGATGATGCCACTCAGGCAATGAAAGTCATGAATGGGAAACGTTTAGGTGGTGAACACATTCGTGTAGACTTCCTTCGATCACATTCTACAAGAAAAGATCAGTCGTCTGATTATGGACAGTTTCAAGGAAAAGGCTATGGGCCTACTGATCCCTACACTGGACAAAAAAGACCTCTGCATTCACAACCCCCAATGGGAAGGAAAAGTGATAGTCAACCCAGTAATATTTTGTGGATTGGCTATCCTCCTGCCATTCAGATTGACGAGCAAATGCTCCACAATGCCATGATTTTATTTGGAGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCATTAGTTGAATTTAGAAGTGTTGATGAAGCTCGGCGTGCAAAAGAGGGTCTTCAAGGACGCCTTTTTAATGACCCTCGAATAACAATTATGTATTCAAGCAATGAGTCTGGAAAAGATTACCCTGGCTTATATGCTGGTAGCGGTCCAAGAACCGACACGTTCATGAATGACCATCCATTTCGACCATTGCAAATGGATTCATTTGGTCATAATCGTCCCGTGGTTCCAAATAATTTTCCTGGACAGTTGCCACCTGGAGGTATTCTTGGACCAAATGCACAAATGCGGCCGTTTGGTCCTCAAGGGAGTCTTGAACCTCTTATTTCTGGTCCTGAGTTTAATGAAATGGGCATGCACCACAAATTTCAGGATGGTAGTTCCAAGGGTAACATGGGTCCAAACAGGAAAAGGCCTTCTCCTCCTGCCCCAGGGATGCTTTCTCCTTCTCCTGCATCAGGTGTCAGGCTCCCTTCAAGATCAGCTTCCGGTGGATGGGATGTACTTGACATAAACCATATTCCAAGGGAGTCTAAACGTATGAGATTAGATGGTACTATGCCTGTTGATGATGTTCCGTATCCTTTAAGGAATGTAGATGATCGTGTGTTAGGTATGGACCAAACATATGGTCTTGATCCGGTGAGCACAAGGTTGGGAGCTGGAGTACTTGGTGCTGCACAACCTGATGCTGATCATATATGGCGTGGAATCATTGCAAAGGGAGGGACTCCGGTTTGTCAAGCTAGATGTGTCCCTATTGGGAAGGGGATAGCTGCTGAGCTTCCCGAGGTGGTTGATTGTTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCTATTGGTTTTGACATTGTTTTCTTTTTGCCAGATAGCGAAGAGGATTTTGCTTCCTACACTGAATTCCTTCGCTATCTTAGTGCAAAAAACCGTGCGGGTGTTGCAAAATTTGCTGATAATACCACATTATTCTTGGTACCCCCTTCTGATTTCCTGACAAAAGTTTTGAAGGTCACTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCTCCAGTTCCAGGTAATACTCCAATGCAGCAGTCTTCGCATTTGCCTATACCATCAAGTCAGTATATGCAGCAGATTCCTCCTTCACAAGCTGAGTATGGATTGATTTCTGCAAAGGAAGAACCAGTTTTGCCAACAGATTATAACAGACTGTTGCATGATGAGTCTAAACTTCCTCCTAAACCAGTCTATCCGGCCACTAGTGGTCCCCCCTCACTTCAGGCTGGGCCTCCGGATTATCCTACTGGTTCCGTGTCCCAAGCTGGAGTTGGATTAACTCCGGAGCTTATTGCAGCTTTAACTAATTTAATCCCTGGAACAACTCAATCATCGACAATTGATGGTGCCAAGTCAGCAGTAGGCTCCTCGACTGTGAGGCCTCCATTTCCCCCTGTTGCACCTAATGATGGTAACCAATCTCATTTATGGAAACAGGACCATCAAATTGTTGATCAGTCTGTTCATCCTCCTCAAAATTTGGGGAGTATGTATAACATTCACAATGCTCACTATCAGCCTTATCCACCACAATCTGCTCCTGGCTTCCCTAGTCAAGTGGTCCCTGGCAGTTCGCATATTCAAGACACTGCTGCTGGTCTGCAGCAGCAGGGTGCTGTTTCGTCTAGACAGATGACTAATTACATGATACCTTCTCATAGTGGACAGGTAGCTGCACCCACCCATGTCAGTCAGCAGTATCAGGTTGAAGTCTCCCCCGGCAACCAAGGAGGATATGGAGTGCTTCAAGGGACAGATGCCTCTGGTTTATATAATTCTCAGGCTTTCCAACAGCCAAATAATTCAGTTGCTGCATCCACTCAAGTTCAGAGTGTTAATCCATCACAGCAACATGGTGTCCTGCCATATACACTGGACCAAGTAAATGCTGACCCTAACAGTCAGAAACTTCCTCTCTATGGAGTTGGTCAGGGCTCGACAGAAGTTGAGGCTGATAAGAACCAAAGGTACCAATCAACGCTACAGTTTGCTGCCAATCTTCTCTTTCAAATACAGCAGCAGCAGCAACAGCAACCCCCTGGAGGACATGGATCAGGAATTCAATAA 2913 0.4631 MPRPAKSVRPSHEGSAAARDSDEPSNNLWVGNLAPDVTDADLMDLFAQYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGFSLRGNSLKIEFARPAKPCKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFFRDRNTACIEFFNLDDATQAMKVMNGKRLGGEHIRVDFLRSHSTRKDQSSDYGQFQGKGYGPTDPYTGQKRPLHSQPPMGRKSDSQPSNILWIGYPPAIQIDEQMLHNAMILFGEIERIKSFPSRNYSLVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNESGKDYPGLYAGSGPRTDTFMNDHPFRPLQMDSFGHNRPVVPNNFPGQLPPGGILGPNAQMRPFGPQGSLEPLISGPEFNEMGMHHKFQDGSSKGNMGPNRKRPSPPAPGMLSPSPASGVRLPSRSASGGWDVLDINHIPRESKRMRLDGTMPVDDVPYPLRNVDDRVLGMDQTYGLDPVSTRLGAGVLGAAQPDADHIWRGIIAKGGTPVCQARCVPIGKGIAAELPEVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLSAKNRAGVAKFADNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPGNTPMQQSSHLPIPSSQYMQQIPPSQAEYGLISAKEEPVLPTDYNRLLHDESKLPPKPVYPATSGPPSLQAGPPDYPTGSVSQAGVGLTPELIAALTNLIPGTTQSSTIDGAKSAVGSSTVRPPFPPVAPNDGNQSHLWKQDHQIVDQSVHPPQNLGSMYNIHNAHYQPYPPQSAPGFPSQVVPGSSHIQDTAAGLQQQGAVSSRQMTNYMIPSHSGQVAAPTHVSQQYQVEVSPGNQGGYGVLQGTDASGLYNSQAFQQPNNSVAASTQVQSVNPSQQHGVLPYTLDQVNADPNSQKLPLYGVGQGSTEVEADKNQRYQSTLQFAANLLFQIQQQQQQQPPGGHGSGIQ 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00642 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 968 - -
Aip03g00642 970 SMART rrm1_1 224 292 IPR000504 GO:0003723
Aip03g00642 970 SMART rrm1_1 104 171 IPR000504 GO:0003723
Aip03g00642 970 SMART rrm1_1 27 94 IPR000504 GO:0003723
Aip03g00642 970 Gene3D - 100 206 IPR012677 -
Aip03g00642 970 SUPERFAMILY RNA-binding domain, RBD 10 100 IPR035979 GO:0003676
Aip03g00642 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Aip03g00642 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Aip03g00642 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Aip03g00642 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Aip03g00642 970 Gene3D - 7 99 IPR012677 -
Aip03g00642 970 Pfam SPOC domain 490 607 IPR012921 -
Aip03g00642 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Aip03g00642 970 MobiDBLite consensus disorder prediction 178 221 - -
Aip03g00642 970 CDD RRM3_Spen 105 174 - -
Aip03g00642 970 MobiDBLite consensus disorder prediction 380 423 - -
Aip03g00642 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Aip03g00642 970 CDD RRM3_Spen 225 294 - -
Aip03g00642 970 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 2 968 - -
Aip03g00642 970 CDD RRM3_Spen 28 97 - -
Aip03g00642 970 MobiDBLite consensus disorder prediction 679 693 - -
Aip03g00642 970 MobiDBLite consensus disorder prediction 1 27 - -
Aip03g00642 970 MobiDBLite consensus disorder prediction 670 703 - -
Aip03g00642 970 SUPERFAMILY RNA-binding domain, RBD 102 297 IPR035979 GO:0003676
Aip03g00642 970 Gene3D - 213 303 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00642 Aip-Chr3 6256668 6266666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00642 27 301 Eukaryotic Initiation Factors Gene Family AT2G23350 22.559 3.18e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00642 - - gmx:100777570 1505.73