Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00626 ATGGGACACAGCTCGAAGAAGAAGAAGCGCGGCGGCGGAGGCGGCGGTGGCGGCAGGAGCAAGGGAAGAGCCCCTTCCAAAGATCACACTTCTCAATCCGCCAACGATGATATTGAACTCTCCGAAGAGATCACTGCTCTATGTGCGATTTTCCAAGAAGATTGCAAGGTTCTTCCTGGCTCACCTCCTCAAATACTTATTAAGCTCAGGCCTTACTCTAAGGACATGGGTTATGAGGACTTGGATGTTTCTGCTCTTCTTCACGTCAGATGCTTACCTGGGTATCCCTTCAAGTGTCCCAAGCTGCAGATTACTCCTGAGAATGGCTTATTAGAGAGTGACACTGATAAACTATTGTCACTCCTCCATGATCAGGCTACTTTAAATGCTAGGGAGGGCCGAGTAATGATCTTTAATTTGGTTGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCAATTGCTAAACCAACTGAATCTAAGCCTTTGCACTCGACTAAGGAAAGCAATGAAGAATTGTTTCTCAAGGATATGGCACCGTCAAACAAAAATATATCTTTTGTTTATGGTTTCATAGACCTTTTCAGTGGTTATGAAGAGTCTTGGAATTGGGAAATTGGAATGGATGAAACTGCCGGAAAAAGTTCTTCTCTTCCTCCCTCTAAGTTAGACACCTCAAAATATGATTCTGAGGCCCGCGAAAAGAAATCTGACAGTAAGGAAAAACCATTAATAAAGCAAGAGCTCCCTGCTAAATTAGATACAGTTGGAGAAGTTAGTGAAGATGGCAATAAGAATACATCCTCGACTAGTTCAAGTGGAAATCTGGTGGACGATCTTGTGGGGAATGACATTGAAGGTGAGAAAGAGGATTTTGTCTTTGCTGAGTATGCACCACAAGATGACGAACAGATGTATGAAAGTGTGTCTTCAGAATCTTTTTCTTCCGCCACTTCTCAACATCAAACATCCCAAACAGTTGAAAAGGATCTTATAATGGTTCACCTGCTTCGTCTATGTGCTTCTAAAGGAACACTGGTTGACTCTTTGCCACAAGTAGCAGAAGAGCTATACAATTTTGGGATATTTTCTGATTGGGCTCGTGATATGGCATCTAAACCTCCCTCCCTTTTTAACAAAACATTTGATAATGTTTTTCAGAAACATGTGGCTTCAACCAGAATATCTCAGTTTTGGAAACCTTCTGATCTTGGTGGTTCAAATACGATTCCCCATAGTTCTCGATATCTGAATGATTTTGAGGAGCTACGGCCTCTTGGACATGGTGGTTTTGGCCATGTTGTGCTGTGCAAAAATAAGCTTGATGGAAGGCAGTATGCTGTAAAGAAGATTCGCCTTAAGGACAAAACCATGCCTGAAAGAATATTAAGAGAAGTAGCCACACTTTCTCGTTTGCAGCATCAACATGTTGTTAGGTATTATCAGGCATGGTTTGAAACCGGAATCGCAAACTCTGAAAATGATGCGGCTTGGAGTTCAAGGACTACACTGAGCCCTTCTTTCAGCTATACCTATAAAGCTGCAAGCTCCAATAATGCCCTTGTGCATGAAAATCAGCTTGAATCAACGTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCACCAGGTGTTTGAATCATATAATCATTTCGACAAAGAGCTGGCATGGCATTTGTTTCGTCAAATAGTGGAAGGTTTGGCACATATACATGGACAAGGAATAATTCATCGGGATTTGACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGACAAGCTTGATCATGATCTTAGCCTTCCTGTTGATCCACCTGGAGTTTCTACAGATGGCACTGGACAAGTGGGGACTTATTTCTATACGGCTCCTGAAATTGAACAAGGATGGCCTAAGATTGATGAGAAGGCGGATATGTACAGCTTAGGTGTTGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCCATGGAGAGACATATTGTGTTGTCTGATCTGAAACAGAAGGGAGAACTTCCTCCGGCATGGGTTGCTCAGTTTCCAGAACAGGAATCCATAGTACGAAAGTTGATGTCTCCAGGTCCTTCTGATCGGCCTTCTGCCACAGAGCTTCTACATAATGCCTTTCCCCCGAGAATGGAATCTGAATTGTTGGATGATATCCTCCGAACAATGAAGAAATCAGAGGATACAAGCATATATGACAAAGTTGTAAATGCCATCTTTGACCAAGAGATGTTAACTTCAAAACATATTCATCAAGCTGGAAGCTTGGGGACAGTTGGAGATAGTTCTTCATCTATTCAGTACACAGATCTTGAAACTGAGGTTCGAGATTATGTTGTAGATGTGAGCAGGGAAATTTTCAGACAGCATTGTGCAAAGCATCTAGAAGTATTAACAATGCGATTGTTGGATGATTGTCCACAGTTTAACAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTCGAACTTTGCCATGAGCTGCGCTTGCCTTTTGTGAATTGGATCATATCAAATCAGAAATCTTCATTCAAAAGATACGAGATATCAAGTGTATACAGAAGAGCAGTTGGACATTCGTCACCAAATCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTACCTCAGCATTGACAGAGGCAGAGGTCATAAAGGTGACAAGGGACATAGTCACTTGCTTTTTCCATGCAGATTCATGTGACATTCATCTAAACCATGGTGAGTTACTGGATGCAATTTGGTCGTGGGTTGGAGTCAAAGTAGAACACAGGCTTAAAGTTGCAGAGATTCTTTCCATGATGGGTTCTTTGCGCCCACAATCTTCAAAAAGGAAATCAAAATGGGGAGTCATAAGGCGGCAGCTTTTGCAGGAACTAAAATTAGCAGAAGCTACTGTAAACAGACTGCAGACAGTTGGTTTAAGGTTCTGTGATTCTGCAAATCAGGCACTTCCTAGATTAAGAGGAGCTCTTCGATCTGATAAACGCACATGCAAGGCACTTGATGAATTGTCTGAACTCTTCAGTCTCTTGAGAATTTGGAAGATTGACCAAAACGTCTATATTGATGCATTGATGCCACCAACTGAAAGTTATCATAGAGATTTATTTTTTCAGGTGTACTTAAGGAAGGAGAACAATCCTGGATCACTCTCTGATGGTGCCTTGCTAGCTGTTGGTGGTCGTTATGACTATTTGCTTCAGCAGTTATGCAGTCACAACTATAAAGGAAATCCCCCCAGTGGTGTAGGGAGTAGCCTTGCATTAGAGACAATAATTCAGAATTGTCCGGTGGATTTTAAGCCCCTTAGAAATGAAGCCAGCACCAGTGTTCTTGTCTGTTCAAGAGGAGGAGGTGGTCTTTTGATGGAGCGGATGGAACTAGTTGCTGAATTATGGGAAGAGAATTTTAAGGCTGGATTTGTTCCCATCCCCGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAGCATGATATCAAATGTCTCGTCATCATAACCGATGCAGGTGTCTCACAGACAGGTTCTGTTAAGGTTCGACACCTTGAATATAAGAGGGAGAAAAATGTTGAGAGAGAAAATCTAGTCAAGTTTCTGTCAGATGCTATGGCAACACAATTCAGAAACCCTTCCATTTGGTTTTAA 3711 0.4193 MGHSSKKKKRGGGGGGGGRSKGRAPSKDHTSQSANDDIELSEEITALCAIFQEDCKVLPGSPPQILIKLRPYSKDMGYEDLDVSALLHVRCLPGYPFKCPKLQITPENGLLESDTDKLLSLLHDQATLNAREGRVMIFNLVEAAQEFLSGIEPIAKPTESKPLHSTKESNEELFLKDMAPSNKNISFVYGFIDLFSGYEESWNWEIGMDETAGKSSSLPPSKLDTSKYDSEAREKKSDSKEKPLIKQELPAKLDTVGEVSEDGNKNTSSTSSSGNLVDDLVGNDIEGEKEDFVFAEYAPQDDEQMYESVSSESFSSATSQHQTSQTVEKDLIMVHLLRLCASKGTLVDSLPQVAEELYNFGIFSDWARDMASKPPSLFNKTFDNVFQKHVASTRISQFWKPSDLGGSNTIPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKTMPERILREVATLSRLQHQHVVRYYQAWFETGIANSENDAAWSSRTTLSPSFSYTYKAASSNNALVHENQLESTYLYIQMEYCPRTLHQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLDKLDHDLSLPVDPPGVSTDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHIVLSDLKQKGELPPAWVAQFPEQESIVRKLMSPGPSDRPSATELLHNAFPPRMESELLDDILRTMKKSEDTSIYDKVVNAIFDQEMLTSKHIHQAGSLGTVGDSSSSIQYTDLETEVRDYVVDVSREIFRQHCAKHLEVLTMRLLDDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISSVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHGELLDAIWSWVGVKVEHRLKVAEILSMMGSLRPQSSKRKSKWGVIRRQLLQELKLAEATVNRLQTVGLRFCDSANQALPRLRGALRSDKRTCKALDELSELFSLLRIWKIDQNVYIDALMPPTESYHRDLFFQVYLRKENNPGSLSDGALLAVGGRYDYLLQQLCSHNYKGNPPSGVGSSLALETIIQNCPVDFKPLRNEASTSVLVCSRGGGGLLMERMELVAELWEENFKAGFVPIPDPSLTEQYEYANEHDIKCLVIITDAGVSQTGSVKVRHLEYKREKNVERENLVKFLSDAMATQFRNPSIWF 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00626 1236 SUPERFAMILY Protein kinase-like (PK-like) 416 732 IPR011009 -
Aip03g00626 1236 Pfam RWD domain 40 148 IPR006575 GO:0005515
Aip03g00626 1236 Pfam Anticodon binding domain of tRNAs 1131 1228 IPR024435 -
Aip03g00626 1236 PANTHER EIF-2-ALPHA KINASE GCN2 21 1235 - -
Aip03g00626 1236 Coils Coil 973 993 - -
Aip03g00626 1236 Pfam Histidyl-tRNA synthetase 872 1113 IPR041715 -
Aip03g00626 1236 SUPERFAMILY Class II aaRS and biotin synthetases 785 1115 IPR045864 -
Aip03g00626 1236 Gene3D - 1127 1226 IPR036621 -
Aip03g00626 1236 SUPERFAMILY Class II aaRS ABD-related 1130 1226 - -
Aip03g00626 1236 Gene3D Phosphorylase Kinase; domain 1 408 538 - -
Aip03g00626 1236 SUPERFAMILY UBC-like 40 148 IPR016135 -
Aip03g00626 1236 Gene3D Ubiquitin Conjugating Enzyme 29 157 IPR016135 -
Aip03g00626 1236 Pfam Protein kinase domain 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00626 1236 CDD STKc_EIF2AK4_GCN2_rpt2 413 722 - -
Aip03g00626 1236 PANTHER HISTIDYL-TRNA SYNTHETASE 21 1235 - -
Aip03g00626 1236 MobiDBLite consensus disorder prediction 1 36 - -
Aip03g00626 1236 MobiDBLite consensus disorder prediction 210 279 - -
Aip03g00626 1236 MobiDBLite consensus disorder prediction 260 278 - -
Aip03g00626 1236 Gene3D Bira Bifunctional Protein; Domain 2 784 1119 IPR045864 -
Aip03g00626 1236 ProSiteProfiles RWD domain profile. 42 151 IPR006575 GO:0005515
Aip03g00626 1236 Gene3D Transferase(Phosphotransferase) domain 1 541 732 - -
Aip03g00626 1236 SMART RWD2001b 42 151 IPR006575 GO:0005515
Aip03g00626 1236 ProSiteProfiles Protein kinase domain profile. 420 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00626 1236 MobiDBLite consensus disorder prediction 22 36 - -
Aip03g00626 1236 MobiDBLite consensus disorder prediction 226 248 - -
Aip03g00626 1236 ProSitePatterns Tyrosine protein kinases specific active-site signature. 577 589 IPR008266 GO:0004672|GO:0006468
Aip03g00626 1236 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00626 Aip-Chr3 6134782 6148461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00626 420 725 MAP Kinase Kinase Kinase AT1G63700 24.765 1.14e-21 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Aip03g00626 Pkinase 3.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00626 K16196 - gmx:100797996 1972.59