Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00601 ATGGAGTCAGATCTTCACCGGCACCCTCCCATGTTCCTGGATCACCACCACCACCACCACCACCACCACCATCACCAGCAGATGAACACCACCACCACCAACAACAACAGCAATTCTTCGGGGCTAACGAGGTTCCGATCGGCACCAAGTTCGTATTTTTCTAGCATCATTGACAAGGAATTCTACGAAAGCATCTTCAACAAACCTTCAAGCCCAGAAACTGAGAAAATCCTCGCACGCTTCATGAATAGCCTTGCAAATGATGAACCTGAAGATGATTCATTACTTGGAGTAGCAGCTGCTACTACTACTACTAATAATAATAATAATAATAAAAATCTGTCACCGCCACAACAAGTAGTTCAGCAAATCTCGCAAGTGAAGGAAGAAGAGATTAGTATTAATACCATTAATACCAATAATACCCTTCAGCCTCAGCCTTTGCCTTCTTCAATGAATAATGAATCATTGGTGCAGCAACCACAGCAGCAGATGAATAGTATGAGTAACAATAATTATGGATCTTTGAGTGGTAATAATCCTCCAACTCAGAGTTTTTATCAAAGTTCAGGAAGACCACCTTTGCCGAATCAGATGAAAACTGGTCGTGGAAATGCTTCTAATCTTATTAGGCATGGTAGTTCACCTGCTGGATTCTTTTCAAACCTGAACATTGAAGGCTATGCTGCTTTAAGAGGCATGGGAACTATGGGAGCTGCTGCTAGCAACACTAGTGAGGATGCAAATTTTTCTCCGGTGGCGAGGTTGAAGAATCCACCAACCTTTTCATCCTCTGGACTAATGACTCCAATAGCTGAAATCAGGAGCACATCCAATACAATAAACAATCCAGAGAGTGCTGAAGCCTTTGCAGAAAGCCAGAGCAGCGATTTTATGTCAGGTTTAACCGTTGGTTCTTGGGACGATTCTTCTTCTTCGATGATGTCCGACAACATTGCTGGTCGGAAAAGGTTCAGAGACGAAGATGTGAAACCATTTGCCGGGGCGAATGTGGCCGACACTCAGACCGAAGCAGGCCAGGCTCCTGGTGCTCCATTGGCTCACCAGTTGAGTATGCCAAACACATCATCGGAAATAGCAGCCATTGAGAAGTTTCTCCAGTGCTCGGATTCTGTCGTGTGCAAGATTCGTGCCAAGCGGGGCTGTGCTACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTACAGGATCTCGTCCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGATTACATCAAAGAACTTCAAAACCAAGTTGAGACTCTTTCGGACAGTCAAGCCAAGTATAGTGATGGAGTGGTAGTGGGTGGGGGTGGTGTTGGTGTTGGTGTTGGTGTTGGTGCTGGTTGTGGCGGtggtgttggtggtggtggtggtggtggtggttga 1461 0.4401 MESDLHRHPPMFLDHHHHHHHHHHHQQMNTTTTNNNSNSSGLTRFRSAPSSYFSSIIDKEFYESIFNKPSSPETEKILARFMNSLANDEPEDDSLLGVAAATTTTNNNNNNKNLSPPQQVVQQISQVKEEEISINTINTNNTLQPQPLPSSMNNESLVQQPQQQMNSMSNNNYGSLSGNNPPTQSFYQSSGRPPLPNQMKTGRGNASNLIRHGSSPAGFFSNLNIEGYAALRGMGTMGAAASNTSEDANFSPVARLKNPPTFSSSGLMTPIAEIRSTSNTINNPESAEAFAESQSSDFMSGLTVGSWDDSSSSMMSDNIAGRKRFRDEDVKPFAGANVADTQTEAGQAPGAPLAHQLSMPNTSSEIAAIEKFLQCSDSVVCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQNQVETLSDSQAKYSDGVVVGGGGVGVGVGVGAGCGGGVGGGGGGGG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00601 486 MobiDBLite consensus disorder prediction 12 27 - -
Aip03g00601 486 MobiDBLite consensus disorder prediction 28 43 - -
Aip03g00601 486 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 452 - -
Aip03g00601 486 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 37 452 - -
Aip03g00601 486 SMART finulus 395 445 IPR011598 GO:0046983
Aip03g00601 486 Gene3D - 390 457 IPR036638 GO:0046983
Aip03g00601 486 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 392 450 IPR036638 GO:0046983
Aip03g00601 486 MobiDBLite consensus disorder prediction 136 194 - -
Aip03g00601 486 Pfam Helix-loop-helix DNA-binding domain 394 440 IPR011598 GO:0046983
Aip03g00601 486 MobiDBLite consensus disorder prediction 1 43 - -
Aip03g00601 486 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 389 439 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00601 Aip-Chr3 5874642 5885310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00601 12 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 36.547 2.54e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g00601 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00601 - - adu:107476789 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00601 03 5874642 5885310 Aip03g00601 03 5874642 5885310 ECH
Aip08g00350 08 2631299 2634233 Aip03g00601 03 5874642 5885310 ECH
Aip06g00343 06 3987675 3990453 Aip03g00601 03 5874642 5885310 ECH
Aip02g01815 02 79335277 79338427 Aip03g00601 03 5874642 5885310 ECH