Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00589 ATGGTCATGGCAGATTCAACCTACAGCAACTCCAATAATGACTATAACACTAACAACCTCCTTCTCTTGGATCTCAATTATTCTCCTTCTCCTTCTCCATCTTCTTCTCCTTCTACCAATTCCTTCAATTACTTTCATCCTCCACCAATCACACAACCCCTTCCCTTCCTTCACCTAAGCCCTACAACAACACATCAACAACAACAACTAGATCTTCAATCTTCATTTTGTGCCATGGAAGTTGACAACAATAACAATAATAAGGTGCCTCTACACTTAGGGCTTCAAAGCACGCTAGTAGTACAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATCACTGTTGCTTCTGAATATGTTATGTCAAATGGAATTAACAGAGGACAGTATTGGATCCCAACACCTACTCAGATCCTCATCGGTCCTACACAGTTCGCATGCCCCCTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGatgcatatGTGGGGGCATGGATCTCAATATAGAAAGGGTCCAGAATCTCTAAGGGGAACACAACCAACAGCAATGTTGAAACTGCCATGTTATTGCTGTGCACCAGGATGCAAGAACAACATAGATCACCCTAGAGCAAAACCACTCAAAGATTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGACTTAAACCCTTCACTTGTAGGAAGTGTTCCAAGGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCGATGGTATTGCTCTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATATCAAGGCATTTGGAAATGGACACAAATCTTATGCAATTAATGACCATCTTTGTGTTGATCAAGATGATAATGGAGCTACCTCTGAAGTTGAAGAAAATGATTCATTCCACTCCTAG 930 0.4075 MVMADSTYSNSNNDYNTNNLLLLDLNYSPSPSPSSSPSTNSFNYFHPPPITQPLPFLHLSPTTTHQQQQLDLQSSFCAMEVDNNNNNKVPLHLGLQSTLVVQEEEEEEEEKITVASEYVMSNGINRGQYWIPTPTQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCSKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGNGHKSYAINDHLCVDQDDNGATSEVEENDSFHS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00589 309 PANTHER ZINC FINGER PROTEIN WIP2 35 305 IPR043584 GO:0003700|GO:0010468
Aip03g00589 309 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Aip03g00589 309 SMART c2h2final6 190 223 IPR013087 -
Aip03g00589 309 SMART c2h2final6 228 248 IPR013087 -
Aip03g00589 309 SMART c2h2final6 144 166 IPR013087 -
Aip03g00589 309 PANTHER ZINC FINGER PROTEIN WIP2 35 305 - -
Aip03g00589 309 SUPERFAMILY beta-beta-alpha zinc fingers 210 248 IPR036236 -
Aip03g00589 309 Gene3D Classic Zinc Finger 193 284 - -
Aip03g00589 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00589 Aip-Chr3 5735689 5737703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00589 100 308 C2H2 Transcription Factor Family AT3G57670 75.598 1.45e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00589 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00589 - - aip:107632313 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00589 03 5735689 5737703 Aip03g00589 03 5735689 5737703 ECH
Aip08g00361 08 2767712 2769411 Aip03g00589 03 5735689 5737703 ECH
Aip06g00359 06 4208694 4210421 Aip03g00589 03 5735689 5737703 ECH
Aip02g01788 02 78051139 78058772 Aip03g00589 03 5735689 5737703 ECH
Aip08g00361 08 2767712 2769411 Aip03g00589 03 5735689 5737703 PCT