Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00578 ATGATCAAGGACGCTATTGTTACGTTGAAGGAGAAAAACGGTTCGAGCCAATACGCGATTCAGAAGTTTCTCGAAGAAAAGCATAAGCAGTTTCCATCGAACTTCAGGAAGCTTCTTTTGTCCAATTTGAAGAAGCTCGTAGCTTCTGGAAAGCTCGTTAAGGTTAAAGGTTCCTTCAAGCTTCCGGCGACAAAGGCGCCCGCATCATCAGCGCCTTCGCAGGCAAAGAAGCCCGCGGCTACGAAGACCAAGACTAAGACTAAGACCAAACCCAAGCCCAAGCCCGCTGTCAAGGTGAAGGCAACAAAAGCAAAGACAACCAAGACTAAATCGGTGAAATCAGTTTCAGCTAAGTCTAAGCCCAAGCCCGCTCCAAAGCCCAAGGCTGTGGCGAAGCCTAAAGCAGCTGCAGCAGCGAAGCCCAAGGCTGCTGCAGCTAAGACCAAAGCAAAGCCCAAGGCAGCTGCTAAGCCACCGGCAAAAGTGTCGAGGATGTCGACTAGGGCTTCGCCAGGAAAGAAGGCTGCACCTGCCGCAAAGCCTGCAGCAAAGAAGGTTGCGGCAGCAAAGAAGAGCGTGAAGCCCAAGAGCGTAAGGTCTCCGGCGAAGAGGGCTTCGGTGAAGAGGGGTGGAAGGAAGTGA 642 0.5234 MIKDAIVTLKEKNGSSQYAIQKFLEEKHKQFPSNFRKLLLSNLKKLVASGKLVKVKGSFKLPATKAPASSAPSQAKKPAATKTKTKTKTKPKPKPAVKVKATKAKTTKTKSVKSVSAKSKPKPAPKPKAVAKPKAAAAAKPKAAAAKTKAKPKAAAKPPAKVSRMSTRASPGKKAAPAAKPAAKKVAAAKKSVKPKSVRSPAKRASVKRGGRK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00578 213 MobiDBLite consensus disorder prediction 61 213 - -
Aip03g00578 213 MobiDBLite consensus disorder prediction 187 213 - -
Aip03g00578 213 Pfam linker histone H1 and H5 family 1 61 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g00578 213 PANTHER HISTONE H1.1 1 210 - -
Aip03g00578 213 SUPERFAMILY "Winged helix" DNA-binding domain 1 72 IPR036390 -
Aip03g00578 213 CDD H15 1 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g00578 213 MobiDBLite consensus disorder prediction 81 107 - -
Aip03g00578 213 Gene3D - 1 68 IPR036388 -
Aip03g00578 213 PANTHER HISTONE H1 1 210 - -
Aip03g00578 213 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 63 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g00578 213 SMART h15plus2 1 58 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip03g00578 213 PRINTS Histone H5 signature 8 25 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip03g00578 213 PRINTS Histone H5 signature 88 102 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip03g00578 213 PRINTS Histone H5 signature 122 139 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Aip03g00578 213 PRINTS Histone H5 signature 144 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00578 Aip-Chr3 5589107 5590232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00578 1 98 Single Myb Histone (SMH) Gene Family AT1G49950 34.694 1.21e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00578 K11275 - pop:18099660 104.76