Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00571 ATGAGGAAGGGTAGTGAGCAATCATCATCATCGAAAAACAACAAGTTGAGAAAAGGGTTGTGGTCACCGGAGGAAGATGACAAGTTGATGAACTACATGATGAACAATGGACAAGGTTGTTGGAGTGATGTTGCTAGGAATGCGGGCCTCCAAAGATGTGGTAAGAGTTGTCGCCTTCGATGGATCAATTACCTCAGACCTGACCTTAAACGTGGTGCATTCTCTCCCCATGAACAACAACTCATCATCCATTTCCACTCTCTTCTTGGAAATAGATGGTCACAAATAGCTGCGCGTTTACCTGGAAGAACCGACAATGAAATCAAGAACTTTTGGAATTCAACAATCAAGAAAAGACTCAAGCAGCAATCAACTACTTCACCAAATGCAAGCGATGATCATGATTATTCCTCTTATGACCCTAACAACAACAACAACATTGTAGGAGGAGGAGAAGGGTTTAATAGTAATTCTACTACACAACAATTTCATCAACACCATCTTCATCTTATGCCACTAGTGTTCAATTCTTCTTCTTCATCATCATCATCATCAATGCAAAACACAGTTCTCAACACCCTAATTGACAGGTTGCCTATGCTAGATCATGGTCTTAACATTCCAGCAGCTAATGGATTCAACAACAAAGGCTTTTATGATTTGGAAAATGGTGTGATTGGGAGTCTAGATAATAATAATAATAATAATAATATTAATAATCTTGTTGCTGAAGAAGTAGTAGTAGGGGATAATACTAATACTAATACTAACACTTTTTCTGACCATGATAATAACCTAAAAGTGTTGGAGAGTGCCAATTACTTTGATGACATAAACAGCATTGTTAACAGCTGCAATAACAACAAGATCATGAAGGGTGGGGTGGTGGAGAATTTGTTTCATGAAGAGTTGACCTTGGGAGAGTGGGACTTGGAAGAATTCATGAAAGATGTTACATCTTTTCCCTTTCTTGCTGATTTTTCAAATTGA 990 0.3818 MRKGSEQSSSSKNNKLRKGLWSPEEDDKLMNYMMNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPHEQQLIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKQQSTTSPNASDDHDYSSYDPNNNNNIVGGGEGFNSNSTTQQFHQHHLHLMPLVFNSSSSSSSSSMQNTVLNTLIDRLPMLDHGLNIPAANGFNNKGFYDLENGVIGSLDNNNNNNNINNLVAEEVVVGDNTNTNTNTFSDHDNNLKVLESANYFDDINSIVNSCNNNKIMKGGVVENLFHEELTLGEWDLEEFMKDVTSFPFLADFSN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00571 329 Gene3D - 72 142 - -
Aip03g00571 329 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Aip03g00571 329 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g00571 329 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Aip03g00571 329 CDD SANT 21 65 IPR001005 -
Aip03g00571 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Aip03g00571 329 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Aip03g00571 329 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Aip03g00571 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Aip03g00571 329 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Aip03g00571 329 PANTHER MYB DOMAIN PROTEIN 55 10 328 - -
Aip03g00571 329 SMART sant 17 67 IPR001005 -
Aip03g00571 329 SMART sant 70 118 IPR001005 -
Aip03g00571 329 CDD SANT 73 113 IPR001005 -
Aip03g00571 329 MobiDBLite consensus disorder prediction 119 161 - -
Aip03g00571 329 Gene3D - 15 71 - -
Aip03g00571 329 PANTHER MYB TRANSCRIPTION FACTOR 10 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00571 Aip-Chr3 5518925 5521704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00571 8 126 MYB Transcription Factor Family AT5G12870 82.353 8.34e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g00571 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00571 K09422 - gmx:100786151 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00571 03 5518925 5521704 Aip03g00571 03 5518925 5521704 ECH
Aip08g00372 08 2874216 2876593 Aip03g00571 03 5518925 5521704 ECH
Aip08g00372 08 2874216 2876593 Aip03g00571 03 5518925 5521704 PCT