Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00554 ATGGAGCTAGAAGAAGCTCCAGTCTTGGAAGAAGAGTCCAAGCTGGAAATTGAGATACACAGTGTCTTTAAGGAATCCGATGTTCCTCCAATAATTGTCAAGTCAGTATGCGATTCTGTTTGCCCTTTTTCCAGGGACGAGAACAGTTTGGTGGCGTCCAAAGAGTCATCCAAATCAGCAAAGAAACTCTGTGGACTCATAGCTTGCTATGCCATTGTTATGCTTGTGGAAGCAATTGGTGGAATAAAGGCCAACAGCCTAGCTGTTATCAGCGATGCGGCACACGTGCTTTCTGATATCGGAGGATTCTGCATCTCTCTCTTTGCAGTATGGGCTTCTGGCTGGGATGCAACACCGCATCAGTCTTTTGGATACAATAGACTTGAGGTTTTGGCTGCACTTTTATCTGTGCAGATAATTTGGGGGATATCTGGTTTTTTAGTATACGAAGCAATAGGTCGACTTGTGCATCGCAGCGCCAGGGTGAATGGAACGCTCATGTTTGCAATTGCAGCATTTGGTTTTGTGTTTAACTTTATCATGGTTGTATGGCTTGGTCATGATCATAGTCATAGTCATGACCATCATCATGGTCACAATCATAGTCATCATCATCATCATGATTGTGGACACTTGGATCATGATCATGGGAACGAGGAACTAGCTAAAGTAACTGATGAAGAGGACCTAAACCTGCTTTCAAGTAGTCAGAGAAATGTTAATGCCTTGAACATAAATCTGCAGGGTGCCTATTTGCATGTCATTACAGATATGATTCAATCTATCGGAGTGATGATTGCTGGAGCCATAATATGGGCTAAACCAGAATGGTTGGTGGTTGATCTTATATGTACACTCATATTCTCTGTTATATCTTTGGGAACTACCATGCCTATGCTTAGGAGTATTTGTGGCATTCTTATGGAAAGGACACCAAGTGAGATCAATGTCATGAAACTAGAAAATGACCTCAGAAGTTTGAAGGGGGTGCAAGGTATTCATGACCTGCACGTTTGGGCCATAACAGTTGGAAAAACTGTTCTATCTTGTCATGTAGTAGCTGAGTCTGGCATAAATTCCATTGATTTACTTGGCAGGATTAGATATCATTGTGAGAAAACATATAAAATACAACATGTAACCGTACAAATTGAGTGA 1158 0.4154 MELEEAPVLEEESKLEIEIHSVFKESDVPPIIVKSVCDSVCPFSRDENSLVASKESSKSAKKLCGLIACYAIVMLVEAIGGIKANSLAVISDAAHVLSDIGGFCISLFAVWASGWDATPHQSFGYNRLEVLAALLSVQIIWGISGFLVYEAIGRLVHRSARVNGTLMFAIAAFGFVFNFIMVVWLGHDHSHSHDHHHGHNHSHHHHHDCGHLDHDHGNEELAKVTDEEDLNLLSSSQRNVNALNINLQGAYLHVITDMIQSIGVMIAGAIIWAKPEWLVVDLICTLIFSVISLGTTMPMLRSICGILMERTPSEINVMKLENDLRSLKGVQGIHDLHVWAITVGKTVLSCHVVAESGINSIDLLGRIRYHCEKTYKIQHVTVQIE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00554 385 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 385 - -
Aip03g00554 385 SUPERFAMILY Cation efflux protein transmembrane domain-like 60 309 IPR027469 -
Aip03g00554 385 TIGRFAM CDF: cation diffusion facilitator family transporter 61 385 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Aip03g00554 385 Pfam Cation efflux family 67 308 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Aip03g00554 385 PANTHER METAL TOLERANCE PROTEIN B 1 385 - -
Aip03g00554 385 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 313 385 IPR036837 -
Aip03g00554 385 Gene3D Cation efflux protein transmembrane domain 59 307 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00554 Aip-Chr3 5418501 5420708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00554 1 385 Inorganic Solute Cotransporters AT2G29410 48.571 3.37e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00554 K14689 - gmx:100777590 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00554 03 5418501 5420708 Aip03g00554 03 5418501 5420708 ECH