Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00553 ATGGTGAAGTTTACAGCAGAAGAGCTTCGGCGTATTATGAACTTGAAGCACAACATTCGCAATATGTCTGTCATTGCACACGTTGATCACGGAAAATCCACTCTCACTGATTCTCTGGTGGCTGCTGCTGGTATCATTGCAAAGGAAGCCGCCGGCGACGTCCGGATGACGGACACACGGCAGGACGAAGCAGAGCGCGGCATCACAATCAAGTCTACCGGAATATCCCTCTATTATGAGATGACTGATGAAGCTCTCAAGAACTTCAAGGGAGAGAGGCAGGGTAATGATTATCTCATCAACCTCATTGATTCCCCTGGCCATGTGGATTTCTCATCTGAGGTTACAGCCGCATTGCGTATCACCGACGGCGCACTCGTGGTGGTGGATTGTATTGAAGGTGTCTGTGTCCAAACAGAAACTGTTCTCCGGCAAGCCCTCGGCGAAAGGATCAGACCTGTTCTCACCATTAACAAGATGGACAGATGCTTCCTCGAGCTTCAAGTGGAGGGAGAAGAAGCATACCAGACATTCCAAAAGGTTATTGAGAATGCTAATGTTATCATGGCTACATATGAAGATCCCCTTCTTGGTGATGTTCAGGTCTACCCGGAGAAAGGGACCGTGGCGTTCTCGGCCGGTTTACACGGCTGGGCGTTCACTCTGACCAACTTTGCTAAAATGTATGCTTCTAAGTTTGGAGTTGATGAGTCGAAGATGATGGAGAGGCTGTGGGGTGAGAATTTCTTTGATCCAGCAACTAAGAAATGGACAACGAAGAACACAGGCTCTCCAACTTGTAAGCGAGGTTTTGTTCAGTTTTGTTATGAGCCAATCAAACAGATGATCGCAACTTGTATGAATGATGAGAAGGACAAGCTCTGGCCCATGCTGCAGAAGCTTGGCAAGTAG 912 0.4792 MVKFTAEELRRIMNLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAKEAAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDEALKNFKGERQGNDYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTINKMDRCFLELQVEGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQMIATCMNDEKDKLWPMLQKLGK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00553 303 PANTHER BNAC03G76150D PROTEIN 22 302 - -
Aip03g00553 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 300 IPR027417 -
Aip03g00553 303 Pfam Elongation factor Tu GTP binding domain 17 224 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 253 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924|GO:0005525
Aip03g00553 303 TIGRFAM small_GTP: small GTP-binding protein domain 19 170 IPR005225 GO:0005525
Aip03g00553 303 CDD EF2 20 230 - -
Aip03g00553 303 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Aip03g00553 303 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 22 302 - -
Aip03g00553 303 Gene3D - 3 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00553 Aip-Chr3 5416088 5417235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00553 1 302 Eukaryotic Initiation Factors Gene Family AT1G56070 92.384 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00553 K03234 - zju:107417973 585.489