Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00552 ATGATGGTGTTCCATCTTCCATCCCCTTCAAAGGCACAAAGGTACCGTGTGGAGAATCTCTATGAGGGTCCTCTCGATGATCCTTACGCAACCGCCATCAGAAACTGCGATCCTGATGGACCGTTGATGCTATATGTATCCAAAATGATTCCTGCTTCTGATAAGGGAAGGTTTTTCGCCTTCGGCCGAGTGTTCTCCGGCAAGGTCTCGACCGGTTTGAAAGTAAGAATCATGGGTCCGAATTATGTTCCGGGACAGAAGAAAGACTTGTATGTGAAGAATGTGCAGAGAACTGTGATTTGGATGGGGAAGAAGCAGGAAACTGTTGAGGATGTTCCATGTGGTAACACAGTAGCCATGGTTGGGTTGGACCAATTCATTACCAAGAATGCAACCTTGACAAACGAGAAGGAGGCCGACGCACACCCGATTCGCGCCATGAAGTTCTCCGTTTCGCCGGTGGTGCGAGTTGCCGTGCAGTGCAAGGTAGCTTCAGACCTTCCCAAACTTGTTGAAGGCCTAAAACGGTTGGCGAAATCGGATCCCATGGTACTGTGCACCATAGAGGAGTCAGGGGAGCACATCATCGCAGGCGCCGGCGAGCTCCATCTTGAGATCTGTCTGAAGGACTTGCAGGAAGATTTCATGGGAGGTGCTGAGATAATAAAATCCGACCCTGTGGTGTCGTTCCGCGAGACTGTTCTAGAACGTTCTTGCCGTACCGTGATGAGCAAGTCACCCAACAAACATAACCGTCTCTACATGGAAGCAAGGCCAATGGAGGAAGGTCTCGCGGAGGCCATCGACGAGGGCCGAATCGGTCCAAAAGACGACCCCAAAAACCGGTCTAAGATCCTCTCGGAAGAATTCGGATGGGACAAGGATCTGGCCAAGAAAATCTGGTGCTTCGGACCGGAAACCATTGGGCCTAACATTGTGGTTGACATGTGTAAGGGTGTTCAGTACCTGAACGAAATCAAAGACTCCATTGTAGCTGGGTTCCAATGGGCTTCAAAAGAAGGTGCACTCGCCGAAGAAAACATGAGGGGAATCTGCTTTGAAGTCTGTGATGTGGTTCTCCACGCCGACGCAATCCACAGAGGTGGTGGCCAGATCATTCCAACCGCAAGAAGAGTGTTCTATGCATCGCAGTTAACCGCGAAACCGAGGCTACTGGAACCGGTTTACCTTGTTGAAATCCAAGCACCTGAACATGCACTGGGTGGGATATACAGTGTGCTGAACCAGAAGAGAGGCCATGTGTTCGAGGAAATGCAGAGACCCGGAACACCGTTGTATAATATCAAAGCTTATTTGCCGGTGATTGAGTCCTTTGGATTCTCGAGCACTCTCAGAGCTGCCACTTCCGGTCAGGCTTTCCCGCAGTCTGTGTTTGATCATTGGGATATGATGTCTTCTGATCCGTTGGATCCTGGGTCCCAAGCTTCTCAGCTTGTTATTGATATTCGTAAGAGAAAAGGCTTGAAGGAGCAGATCACACCTCTCTCTGAATATGAAGACAAGCTCTGA 1530 0.4987 MMVFHLPSPSKAQRYRVENLYEGPLDDPYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGQKKDLYVKNVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEADAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDEGRIGPKDDPKNRSKILSEEFGWDKDLAKKIWCFGPETIGPNIVVDMCKGVQYLNEIKDSIVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPEHALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQSVFDHWDMMSSDPLDPGSQASQLVIDIRKRKGLKEQITPLSEYEDKL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00552 509 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 508 - -
Aip03g00552 509 SUPERFAMILY Translation proteins 9 142 IPR009000 -
Aip03g00552 509 Pfam Elongation Factor G, domain III 153 215 IPR041095 -
Aip03g00552 509 Pfam Elongation factor G C-terminus 390 476 IPR000640 -
Aip03g00552 509 PANTHER - 1 508 - -
Aip03g00552 509 CDD eEF2_snRNP_like_C 393 471 - -
Aip03g00552 509 Gene3D - 389 509 - -
Aip03g00552 509 Pfam Elongation factor G, domain IV 277 388 IPR005517 GO:0005525
Aip03g00552 509 Pfam Elongation factor Tu domain 2 60 133 IPR004161 GO:0005525
Aip03g00552 509 CDD EF2_II 41 136 - -
Aip03g00552 509 Gene3D Translation factors 9 150 - -
Aip03g00552 509 SUPERFAMILY Ribosomal protein S5 domain 2-like 228 392 IPR020568 -
Aip03g00552 509 CDD aeEF2_snRNP_like_IV 225 397 - -
Aip03g00552 509 SUPERFAMILY EF-G C-terminal domain-like 393 504 IPR035647 -
Aip03g00552 509 Gene3D - 236 388 IPR014721 -
Aip03g00552 509 SMART EFG_C_a 390 485 IPR000640 -
Aip03g00552 509 SMART EFG_IV_2 271 388 IPR005517 GO:0005525
Aip03g00552 509 SUPERFAMILY EF-G C-terminal domain-like 150 226 IPR035647 -
Aip03g00552 509 CDD EF2_snRNP_III 153 225 - -
Aip03g00552 509 Gene3D Elongation Factor G (Translational Gtpase), domain 3 151 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00552 Aip-Chr3 5414545 5416074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00552 1 509 Eukaryotic Initiation Factors Gene Family AT1G56070 90.766 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00552 K03234 - tcc:18594569 984.556