Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00549 ATGAATGGATCAGCATCATCATCATCATCGTCAAAGAAGATAAAGGTAGAAAAAACTGAAGATACAAATGAAAAACCAGTTACACCACCCATGCGTGAGTGTGAGTTTTGTGGGAAGAAATTCAGCTCCGGAAAAGCTCTTGGCGGCCATAAAAGATTCCACCTTCAACTTCTAAGAAAAGAGAGAGAATCAGCCAACAAGTTGGCGGTTACTAGTGATAATTATGGCGGCGGCAACGACAGAGGGAGCAACATAAAGTTACTATCCTCTTTGGATTCTCCTAACAAGAAGCTACTTTGTTGTCTTTGCAACAAAGAGTTTTTATCAGAAAAGTCGTTATTCGGCCACATGAGATCTCATCCTGGAAGAGAATGGAAGGGTATTCACCCTCCAAATGATGATGATGATAATGGCTTGATGGAACCTGCGGTGGTTTCACCAATACCATCATTATCATCACCTTCTATTGATATATCAAAATCGTTGCCACCATCTTGGTTGAAGACCGGAATTCGAGGTAAGAAAGGCATTTTCGATGAAATTCTTGGAGGTGTTGTTGCTATTATGGTTGACAAATCCCATGAGAATAATAAGAGTAGTTTCGATCTACAAAGTAGGGCAAAAATTGAGCATGATTATGGTGATAGAGAAAAGGAAAAAGAGGGTGATTTGGTCAAAGAAGGGTGTAATTTGAAGAAAAGGAAAAGAATATTATCTAATAATATGAACGATGAAATTACAACTAATAAGAAGAACACAAAGTTGATAGTAAGACTCAAGACTCGTCCTCAATGCGAAGAAGATGATGGATCCTCGGCCGAGAAAGGATTTCAATGCAACATTTGTGACGAGTATTTTGCAACATTTCAATCTTTAAGAGGACATAGGTCAAACCACAACAAAGAGAAGAAAAGCAAGAGTCACAAGGATTTAGAGAATACTACAGAAGAATCAAGTGAACCTAGTTCAAAAATTCTTAGAGAGTTTGATTTGAATGAGCTACCTGAGAATAATAATATAGAAGATGGAGGAAGTTAG 1038 0.3786 MNGSASSSSSSKKIKVEKTEDTNEKPVTPPMRECEFCGKKFSSGKALGGHKRFHLQLLRKERESANKLAVTSDNYGGGNDRGSNIKLLSSLDSPNKKLLCCLCNKEFLSEKSLFGHMRSHPGREWKGIHPPNDDDDNGLMEPAVVSPIPSLSSPSIDISKSLPPSWLKTGIRGKKGIFDEILGGVVAIMVDKSHENNKSSFDLQSRAKIEHDYGDREKEKEGDLVKEGCNLKKRKRILSNNMNDEITTNKKNTKLIVRLKTRPQCEEDDGSSAEKGFQCNICDEYFATFQSLRGHRSNHNKEKKSKSHKDLENTTEESSEPSSKILREFDLNELPENNNIEDGGS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00549 345 MobiDBLite consensus disorder prediction 294 345 - -
Aip03g00549 345 SMART c2h2final6 277 299 IPR013087 -
Aip03g00549 345 SMART c2h2final6 98 120 IPR013087 -
Aip03g00549 345 SMART c2h2final6 32 54 IPR013087 -
Aip03g00549 345 ProSitePatterns Zinc finger C2H2 type domain signature. 279 299 IPR013087 -
Aip03g00549 345 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 337 IPR044653 GO:0003700
Aip03g00549 345 MobiDBLite consensus disorder prediction 13 28 - -
Aip03g00549 345 MobiDBLite consensus disorder prediction 304 331 - -
Aip03g00549 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 54 IPR013087 -
Aip03g00549 345 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 13 337 - -
Aip03g00549 345 Gene3D Classic Zinc Finger 4 124 - -
Aip03g00549 345 Gene3D Classic Zinc Finger 258 330 - -
Aip03g00549 345 SUPERFAMILY beta-beta-alpha zinc fingers 97 299 IPR036236 -
Aip03g00549 345 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Aip03g00549 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 304 IPR013087 -
Aip03g00549 345 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Aip03g00549 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Aip03g00549 345 Pfam C2H2-type zinc finger 100 121 - -
Aip03g00549 345 Pfam C2H2-type zinc finger 33 55 - -
Aip03g00549 345 Pfam C2H2-type zinc finger 277 301 - -
Aip03g00549 345 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00549 Aip-Chr3 5338271 5339308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00549 34 131 C2H2 Transcription Factor Family AT2G26940 38.211 1.02e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00549 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00549 - - adu:107496635 587.415