Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00544 ATGGCTGTTACCTTCTCAGATCTGCACACAGAGTCTGGACTCAAAACCCTAGATGAGTTCCTCTCTGGGAAGGCCTATGTTTCTGGGGATCAATTGACAAAAGATGATATCAAAGTGTATGGTTTTGTTTCGGAGAAGCCAGGTAGCTCTTTTCCCAGTGCTGCGAAGTGGTTCGATGTTGTCTCTTCCCATCTTGCTGCAAGCTTCCCTGGCAAAGCTCAAGGTGTGAAATTTGCTGGCCAAGGTGCTCCAGCTGAAGCTGCACCTGCCAAAGCGGCCGCGGCTGCTGATGATGATGATGATCTTGATCTCTTCGGTGATGAGACAGAGGAGGATAAGAAGGCAGCTGAGGAACGGGAGGCTGCAAAGAAGACCGCGAAGAAGAAAGAAAGTGGAAAGTCATCCGTTTTGCTTGATGTTAAGCCTTGGGATGACGAAACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGCATTCAGATGGAGGGTCTACTCTGGGGAGCATCCAAACTGGTTCCCGTTGGATACGGCATCAAGAAGCTACAGATCATGATGACTATTGTTGATGACCTTGTGTCTGTCGACTCCCTCATCGAGGAGCATCTCACTGTCGAGCCATGCAACGACTCAGAAATTTGGCCTTCTAAGCTTCGATTTCCTTTGAAGGGAAGTGAAATCCGGTGCAGAATTGGAGGCTTTAGTCAAAGAGAAAGAATGTCAAGTGGAGCAACGCACTGGTGTTACGAATGCAGGCAGCCAATTGTGCTCGGAGGGAGGGATGTTGTTTGTCCCTACTGTGATGGAGGGTTCGTTCAAGAACTTAATGAATTGCAAGGATTTGCGCCTCAACATGCCTTTCCATCATCACAGATGGGGGAGTTCCATCAGATGCCTGATTTTTTCGATGCTTTGCATGCTTTTATGGGGCGGAGGGGTCCTGATCCAAGGTTTGGTTTTATAGATGCTGTGGATAATTTCATGAGGCAGAGAATGGCTGGAAGGCACCCCAATTTTGATGTTAGAGGGAGGTCTGGTCCTGCCCCGGGTCCTGAACAGAGTTGGGGTGTTGTTAGTTCTGGTCCTTATTTGATATTTCACGGTCAAGTTCCTGGATTCACCTTGGCTAATGGCGGCAGTCCAAGAGGTGGTCCGAGGGGTGTTGATTTCGGTGACTACTTTATGGGCCCTGGACTTGAAGAACTTATTGAGCAACTCACCATGAATGAACGGCGTGGTCCACCCCCAGCTGCACGTACTTCAATTGACGCAATGCCTACTATTAAGATCACGAGTGCGCATCTTCGCCAAGATTCACACTGTCCCGTGTGTAAAGAGAAATTTGAACTGGGATCTGAAGCCAGAGAGATGCCATGTAACCATATTTACCACTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAACTTCCACCTCAAGGACATGCTAGTTCTCGTGGTAGTCGAAGTGGGGGTGGAAGGAACGCCAACAGTAGTGGTGACAGCGAGAGCAGCTCCAGGAGCAGGGAGAGCAGCCATCAGAGCCAAGGAAGGAGAAATCCTCTATCATTTCTGTGGCCGTTCCGTTCTTCCAGTTAA 1620 0.4889 MAVTFSDLHTESGLKTLDEFLSGKAYVSGDQLTKDDIKVYGFVSEKPGSSFPSAAKWFDVVSSHLAASFPGKAQGVKFAGQGAPAEAAPAKAAAAADDDDDLDLFGDETEEDKKAAEEREAAKKTAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIQMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEHLTVEPCNDSEIWPSKLRFPLKGSEIRCRIGGFSQRERMSSGATHWCYECRQPIVLGGRDVVCPYCDGGFVQELNELQGFAPQHAFPSSQMGEFHQMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPGPEQSWGVVSSGPYLIFHGQVPGFTLANGGSPRGGPRGVDFGDYFMGPGLEELIEQLTMNERRGPPPAARTSIDAMPTIKITSAHLRQDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGSRSGGGRNANSSGDSESSSRSRESSHQSQGRRNPLSFLWPFRSSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00544 539 Pfam Ring finger domain 439 481 IPR001841 -
Aip03g00544 539 ProSiteProfiles Zinc finger RING-type profile. 440 481 IPR001841 -
Aip03g00544 539 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 98 106 IPR001326 GO:0003746|GO:0005853|GO:0006414
Aip03g00544 539 CDD RING-H2_RNF126_like 440 481 - -
Aip03g00544 539 Gene3D - 126 210 IPR014717 -
Aip03g00544 539 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 239 539 - -
Aip03g00544 539 SMART EF1_GNE_2 133 277 IPR014038 GO:0003746|GO:0006414
Aip03g00544 539 Pfam EF-1 guanine nucleotide exchange domain 135 205 IPR014038 GO:0003746|GO:0006414
Aip03g00544 539 MobiDBLite consensus disorder prediction 522 539 - -
Aip03g00544 539 MobiDBLite consensus disorder prediction 490 512 - -
Aip03g00544 539 Pfam zinc-ribbon 244 274 IPR039525 GO:0061630
Aip03g00544 539 MobiDBLite consensus disorder prediction 487 539 - -
Aip03g00544 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 487 IPR013083 -
Aip03g00544 539 PANTHER OS03G0351800 PROTEIN 239 539 - -
Aip03g00544 539 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Aip03g00544 539 CDD EF1B 131 200 IPR014038 GO:0003746|GO:0006414
Aip03g00544 539 SUPERFAMILY eEF-1beta-like 130 212 IPR036219 -
Aip03g00544 539 SMART ring_2 440 480 IPR001841 -
Aip03g00544 539 SUPERFAMILY RING/U-box 420 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00544 Aip-Chr3 5282941 5290139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00544 1 209 Eukaryotic Initiation Factors Gene Family AT5G12110 72.558 3.30e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00544 K11982 - gmx:100813674 501.901