Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00540 ATGAGGAAGAAACTGGATACACGTTTCCCTGCTGCTAGGATTAAGAAAATCATGCAAGCTGATGAGGATGTAGGGAAGATTGCTATGGCTGTGCCTCTTCTAGTTTCTAAAGCATTAGAGCTATTCCTGCAAGATTTGTGTAATAGGACATATGATATAACTCTTAGGAGAGGGGCAAAGACCATGACTGCTTTGCATTTAAAGCATTGTGTCCAGACATTTAATGTGTTTGATTTTCTGAAAGATATTCTCAACAAGGTTCCTGATTTAGGTGGTTCTGGTGCGACGGGTGATGATCGTTCTATCCCTAAGAGGAGGAAAGTTGCGGAAGGTGATGATAATGACAGCGATGAGGAGCAAAAGAGAAATAAGATGCTAGAGGCCAGAAATACTAGTGGCAGAGGAAGGGGTAGGGGGAGAGGTAGAGGTCGTGGCCGAGGACATAGAACAGCAGATCATGATCATGAAATGATTTTGCATGTCAAGTTTGAAGATGAATCTGATGTATTGAAGCAAAATGGCAAGCACACACACAGCAGTGAAAGCCCGGAAAATGTGTTGGAACATGAAGAAGTTAAGCCGAGTTTGTCAGTTAGCAGGCAAGCCGAAGCGTGTGTAAGGAATATCGACTTAAATATGGCTCCAGTTGATGAAGATATGGATTCATTCGACACACAAGCTCCAGTCCCAGTAATGGATTCATCGGACACACAAGCTCCAGTCCCAGTAATGGATTCATCAGATACACCAACTCCTGTCCCGACTACCTCATCTGCGAAACAGAGAGTAGAAGAGAAGCACGAGGAATACCCTGGATGGTCCTTTTCGGACATGGAAAAAATGAGCATCGACACCATTCAGTTGGCGAACATAAACGGAAGGATAGATGAAGACGACGAAGATTATGACGAAGAAACATAG 921 0.4365 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCNRTYDITLRRGAKTMTALHLKHCVQTFNVFDFLKDILNKVPDLGGSGATGDDRSIPKRRKVAEGDDNDSDEEQKRNKMLEARNTSGRGRGRGRGRGRGRGHRTADHDHEMILHVKFEDESDVLKQNGKHTHSSESPENVLEHEEVKPSLSVSRQAEACVRNIDLNMAPVDEDMDSFDTQAPVPVMDSSDTQAPVPVMDSSDTPTPVPTTSSAKQRVEEKHEEYPGWSFSDMEKMSIDTIQLANINGRIDEDDEDYDEET 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00540 306 MobiDBLite consensus disorder prediction 99 134 - -
Aip03g00540 306 MobiDBLite consensus disorder prediction 243 259 - -
Aip03g00540 306 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 305 - -
Aip03g00540 306 MobiDBLite consensus disorder prediction 243 276 - -
Aip03g00540 306 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Aip03g00540 306 SUPERFAMILY Histone-fold 3 88 IPR009072 GO:0046982
Aip03g00540 306 MobiDBLite consensus disorder prediction 260 274 - -
Aip03g00540 306 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Aip03g00540 306 PANTHER HISTONE SUPERFAMILY PROTEIN 1 305 - -
Aip03g00540 306 MobiDBLite consensus disorder prediction 90 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00540 Aip-Chr3 5223877 5226496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00540 1 127 CCAAT-HAP5 Transcription Factor Family AT3G12480 69.925 4.04e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aip03g00540 CBFD_NFYB_HMF 6.5e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00540 K21752 - gmx:100814800 359.377