Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00533 ATGGCAGCCATAAGTCTCCGGAAGGGTAACACCCGTCTTCCGCCGGAAGTGAACCGCGTCCTCTACGTCCGAAACCTACCTTTCAACATCACCAGCGAAGAGATGTACGACATCTTCGGAAAATACGGCGCCATTCGCCAGATCCGAATCGGCACTAACAAGGACACTCGCGGCACCGCCTTCGTCGTCTACGAGGATATCTACGACGCCAAGACCGCCGTCGACCACCTCTCCGGTTTCAACGTTGCGAATCGGTACCTTATTGTTCTGTATTACCAGCAAGCGAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGATGAGATTACGAAGATGCAGGAGAAGTACGGTGTCTCCACCAAAGATAAGGCTCAAGTGATTCTGGTTTAA 393 0.514 MAAISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEITKMQEKYGVSTKDKAQVILV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00533 130 SMART rrm1_1 20 90 IPR000504 GO:0003723
Aip03g00533 130 PANTHER SPLICING FACTOR 3B SUBUNIT 6 5 116 - -
Aip03g00533 130 CDD RRM_SF3B14 17 93 IPR034150 -
Aip03g00533 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Aip03g00533 130 PANTHER SPLICING FACTOR 3B 5 116 - -
Aip03g00533 130 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Aip03g00533 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Aip03g00533 130 Gene3D - 15 121 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00533 Aip-Chr3 5163621 5165182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00533 21 113 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 2.16e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00533 K12833 - gmx:100802877 246.514