Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00528 ATGATAATGATGATGGATTCATCATCATCACAAAAGAAGTTACCATCATCATCATCAGTGCCTGCACCATTCCTGACAAAGACATACCAACTAGTTGATGATCCTATGACTGACCACATAGTGTCATGGGGTCATGATGGTCATTCCACATCATCATCATCATCATTTGTTGTTTGGAGACCTCCTGAGTTTGCCAGAGACCTTCTTCCCAACTATTTCAAACACAACAACTTCTCCAGCTTTGTTAGGCAACTCAATACCTATGGATTCAAGAAGGTAGTTGCTGATAGATGGGAATTTGCAAATGAGTATTTCAGAAAAGGAGCAAAACATCTTCTATGTGAAATCCATAGAAGAAAAACCCCTCATCACCATCATCATCATCATCAAGAGAATAATAATGAAGCTCTATGTTGGATTGATTCTTCTACAACTCCTACTACTATTCCTTCTATTCCTACTTCATTATTACTACCTTCTCCTAAATCACCATCATGTTCTTCATTAGGAGGAGGCACTAATAGTGATCATCATCACCATCAACATAATCATATCTTAGCAGCACTTTCTGAGGATAATCAAAGGCTAAGGAGAAAGAACTTGATGCTCTTATCTGAACTAACTCACATGAAGAATCTCTACAATGATATCATCTACTTCATCCAAAACCATCTCAAACCTGCTTCTTCTCCCTCTCATCATAATCAAACATTAACTATTCCAAAGCTGGTGGAGTTGGATTCATCACCAAAGGGTAGTAGAATGATGATGAGTATTAGTGATGATGATGATGATGATGATGATTACAACAATAATAATTGTAGTTCTTCTTCAGTGAAGCTCTTTGGTGTTCCTCTTAGTGGTAAAAAGAGATTACACCCAGATAATATTTTTCAACAAGATTAA 906 0.3675 MIMMMDSSSSQKKLPSSSSVPAPFLTKTYQLVDDPMTDHIVSWGHDGHSTSSSSSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTPHHHHHHHQENNNEALCWIDSSTTPTTIPSIPTSLLLPSPKSPSCSSLGGGTNSDHHHHQHNHILAALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHLKPASSPSHHNQTLTIPKLVELDSSPKGSRMMMSISDDDDDDDDYNNNNCSSSSVKLFGVPLSGKKRLHPDNIFQQD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00528 301 SMART hsfneu3 20 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00528 301 Coils Coil 186 206 - -
Aip03g00528 301 Pfam HSF-type DNA-binding 24 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00528 301 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 292 IPR027725 -
Aip03g00528 301 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 3 292 - -
Aip03g00528 301 MobiDBLite consensus disorder prediction 249 272 - -
Aip03g00528 301 MobiDBLite consensus disorder prediction 159 181 - -
Aip03g00528 301 Gene3D - 17 121 IPR036388 -
Aip03g00528 301 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip03g00528 301 SUPERFAMILY "Winged helix" DNA-binding domain 21 119 IPR036390 -
Aip03g00528 301 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00528 Aip-Chr3 5100729 5102086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00528 19 293 HSF AT1G46264 47.040 1.40e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip03g00528 HSF_DNA-bind 2.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00528 K09419 - gmx:100527682 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00528 03 5100729 5102086 Aip03g00528 03 5100729 5102086 ECH