Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00511 ATGGAGAAGCAATCAGATGATGATCAAGATCATAGAAGAACAGCAGAAAAGGTTGTTGTGAGTAGTAGCAGTGATGGGAATGAAGTGCAAGCAGTGAATAATGTGAATCCAACAAGGTCCTATGAATGCAACTTCTGCAAGAGAGGCTTCTCTAATGCACAAGCACTTGGAGGTCACATGAACCTTCATAGGAAGGACAAAGCAAAGATCAAAGAGCAGCAACAGTTTTCTTCTTCTTCAAATCAAACTACTCATCATCAACAATTTTTATTGGAGGGGAATCTTGGTAGTAACAATGATAATAATAATAAAGAGCTTTTGAATGTGCCTCATCAACCAGTTATGGACGATGAAACCAATAATAATAATGTTGTGATGATGAGGCAGTTACCACTCTTTTCAGAATCATCATCATCACCTCATCATCTTCAACAGCAAGAGGATCAAATTTCTGGTCAACAAGGTCCCTCATCATCTTCAGAATTAGACCTTGAACTAAGATTAGGGCTTGAGCCTCCACAAGGATCTAATTCATCATCAGCTACAATAACGGGTACTAGAAAATTCTTTTGA 573 0.3822 MEKQSDDDQDHRRTAEKVVVSSSSDGNEVQAVNNVNPTRSYECNFCKRGFSNAQALGGHMNLHRKDKAKIKEQQQFSSSSNQTTHHQQFLLEGNLGSNNDNNNKELLNVPHQPVMDDETNNNNVVMMRQLPLFSESSSSPHHLQQQEDQISGQQGPSSSSELDLELRLGLEPPQGSNSSSATITGTRKFF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00511 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Aip03g00511 190 MobiDBLite consensus disorder prediction 135 190 - -
Aip03g00511 190 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Aip03g00511 190 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Aip03g00511 190 MobiDBLite consensus disorder prediction 66 86 - -
Aip03g00511 190 MobiDBLite consensus disorder prediction 1 18 - -
Aip03g00511 190 MobiDBLite consensus disorder prediction 135 161 - -
Aip03g00511 190 Pfam C2H2-type zinc finger 41 65 - -
Aip03g00511 190 MobiDBLite consensus disorder prediction 1 31 - -
Aip03g00511 190 Gene3D Classic Zinc Finger 18 101 - -
Aip03g00511 190 PANTHER OS07G0101800 PROTEIN 33 179 - -
Aip03g00511 190 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 33 179 - -
Aip03g00511 190 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00511 Aip-Chr3 4923155 4924168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00511 38 180 C2H2 Transcription Factor Family AT3G53820 33.117 4.95e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00511 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00511 - - adu:107477079 308.145