Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00500 ATGGAAGATCAGTTTTTCTCTGAGGGAGAGGGAATTGGGTGTTGGACACCTCCTGGCGTTCAATTCGATGGACCAAGCATGATAGACAACGGAATAAAAAATCTTGTATCAGAGGAGATGCTTGACAACCTCCCTGATCTCATGAACTTCGATAACCTTGCTGGTTGGGGTAATATTCCATCTGTGACTGATCATAATTTAGATAATGGAATTTCATCACTTGCCTCTATGCCGTATTCTCCACATGATGCATTCAGTTTAGTGGAACAGGCCAATGATCCATACTTTATGACAAAAGATTGTGGAAATTATAATGCTATTGAAACCTCCTTGGGTTTCGATGAGAAGGTTGTGTTACAGCAATTGGAGACCCAACTTGGGTTGTCAGAAGATGCAAATGATATGAATAACATAAATGGATCACTTCAAGAATTGAGTGCTGCTGACATGGGAAATTGCTTGGTGCCTAGACCATTTGCTTGGTCGCTTGATGAGAAAATACTGAGGGCTATGAACTTGTTTAAGGAATCAGTTGGTGATGGAATATTGACACAAGTTTGGGCACCAATGAAGCATGGTAATGACTTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCACATGCTAGCTGGATATCGAGACGTGTCGAGGGAATTTACCTTTTCTGCTGAAGACAAACCAGGGTCTTTTCCAGGGCTTCCCGGACGTGTGTTTATGTCCCAAATTCCTGAATGGACCTCCAATGTTGGGTACTACAATAAAAGTGAGTACATGAGGGTGGAGCATGCAATTAATCACGAGGTTCGTGGATCAATTGCGGTTCCCATAATTGATACGCTCGCTGAACCACCTTGTTGTGCTGTACTAGAACTTGTCACTACAAAGGAAAAGCCTGATTTTGACAAAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTACACCTCCACGACTTATGTCCCAGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGGGATAATTGATGTGTTACGAGCTGTGTGTCATGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATCATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGGTTAAAATTCCTGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTAGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCATGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTACTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTCAAGAACAGCAACTTTTATTAAACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGACAGTTTCGGATGCTGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCTATGTCCTTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGATTGAGAAAAAGAAAAGTCCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCAGTCCAGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGCCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGGAAAATATCCTGATCCTGCATCAAAAGATGCGGTCACCGTATCTCCGGCATCTGGTGGCAAAGATTCAAAACCAATAGGCATGGATGATGGTGGATTACGGCAAGAACCCTTTCTGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGCATATCACAGTCCAAACACCCTGGTTGCCGATGAGATGGAAAATTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGTCAGACTCGTCAAATGGCTCTGGCTCTCGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAAGGGATCAAAATTTATTGTCAAAGCTGCCTACAAAGAAGATATGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCTCGACGATGAAGAGGAATGGATGA 2541 0.4207 MEDQFFSEGEGIGCWTPPGVQFDGPSMIDNGIKNLVSEEMLDNLPDLMNFDNLAGWGNIPSVTDHNLDNGISSLASMPYSPHDAFSLVEQANDPYFMTKDCGNYNAIETSLGFDEKVVLQQLETQLGLSEDANDMNNINGSLQELSAADMGNCLVPRPFAWSLDEKILRAMNLFKESVGDGILTQVWAPMKHGNDFILSTSEQPYLLDHMLAGYRDVSREFTFSAEDKPGSFPGLPGRVFMSQIPEWTSNVGYYNKSEYMRVEHAINHEVRGSIAVPIIDTLAEPPCCAVLELVTTKEKPDFDKELEIVSSALQLVNLRTTTPPRLMSQCLSNNKRAALTGIIDVLRAVCHAHSLPLALTWIPCYHSEGIGDEASRIRIKDGVKIPGEKTVLCIEESASYINDIVVGGFVHACVEHYLEEGQGVAGKALQSNRPFFYSDVKAYNISEYPLVHHARKYKLNAAVAVRLRSTHTNDDDYIIEFFLPVNMNGSQEQQLLLNNLSDTMQRMCQSLRTVSDAELYGIEGSQVQFSKEEGSSFCSMSRGNSHMAPDGDHDSVQPMSLTNNETEAAHNQAMDGSRKQIEKKKSPVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYKGGFMPGGSSNQEINAHKSSLFRKKCSGKYPDPASKDAVTVSPASGGKDSKPIGMDDGGLRQEPFLVSILESSRCDIAYHSPNTLVADEMENYLNGADKLGEHHNPTTSSMSDSSNGSGSRKFENRKHLKAKSPCVDKGSKFIVKAAYKEDMIRFKFDPAAGCLQLYEEVATRFSTMKRNG 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00500 846 Pfam RWP-RK domain 591 639 IPR003035 -
Aip03g00500 846 ProSiteProfiles RWP-RK domain profile. 571 659 IPR003035 -
Aip03g00500 846 MobiDBLite consensus disorder prediction 697 722 - -
Aip03g00500 846 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 712 - -
Aip03g00500 846 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 714 840 - -
Aip03g00500 846 MobiDBLite consensus disorder prediction 762 797 - -
Aip03g00500 846 PANTHER PROTEIN NLP8 5 712 IPR045012 GO:0003700
Aip03g00500 846 MobiDBLite consensus disorder prediction 767 784 - -
Aip03g00500 846 PANTHER PROTEIN NLP8 714 840 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00500 Aip-Chr3 4838932 4842225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00500 1 839 NLP Transcription Factor Family AT2G43500 46.396 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip03g00500 RWP-RK 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00500 - - ahf:112736799 1615.13