Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00490 ATGGATCCAAATTATCCAATAGGCGGCAGTGATGATTTCATGAACAGCTTCCAAATTGGTGAAGATGGCACCATAGTATTCTCTGATGATCAAAATCAGTTTTATTATGATGCCAACCAGCACCTTGATCCTCTTTACCAGCATGTTGCAGACCAACTTTTTGATGAATTTCCTCAGTACACAAGCCATGTGGAAGAAGCTGCAGCTGCTCCTGTTGCCTCCACCGTGGTGGATCCTTCCGTTGAGGACGCTGATTTCTCAGAAACAGCAAAGTTTATAACACAAGTTCTCATGGAAGAGGGTGTTGAACAAAGGCCATTCTATGACCCTTTCAGCTTGAATGCCACTGAGCAATCCTTCTATGATGCTCTTAACGATGTTCTCATAGACAACATCAACATGCCACTCTCCCCCAATGAACACCCTCTTGATGTTCATCATCAAGGTGGAACAACCAGCAGCAGCAGCAGCGGCAGCAACAGTGGCAACAACAACGACAATCAAAACAATAACAACCCTGTTGATGAGAACTCTAGCGAGTTTCTGAAGCCTTCTGTTTCTCCTGATACCTTTAGCTCTGGTGATCATGCTTTTCAGTTTAACTCCCATGCCATTTCTCAACATGACTCGAATGTTTCCTATGCTAATTTTGGGGTGTATGATGTGGATACTTCTTTTACCAAGCTGTTGGCTCAAAATATTTTCAGCGACTCAGATTCTGTCTCCCAGTTCAGGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCCTCCGGGACCTCAGCTTGTGACTGGTTTTGAGACCACACCGGCTGTCGTGGTGCCTATAGACGAACCAAAGGGAGATAAAGCCGTTGGGTTGAAGGGCAGAAAGAATCATGAACGTGAAGAATGGAGTGATGATACAGAAGAAGGGAGGAGTAACAAGCATTCGGCAACTAGCAGTGTAGTTGATGAGAGTGAATTATCTGAAATGTTTGATAAAGTATTGCTTAGTATTGGTGCGCCAATGTGCTTTCCAGTGAACAATGAAGTAGAGAAAGCTTCTAATCCCTCAACCTCTAATGGAGGGAAGGGTCGTCCTAAGAGACAAGGGAAGAAGAAAGAAACCATTGATTTGAGGACCCTTTTGGTTCTGTGTGCACAAGCTGTGTCTGCTTGTGACAACAGGACTGCCACTGAGCTTCTCAAGCAAATTAGGCAGCATTCGACTCCCTCTGGGGATGCAACGCAAAGAACGGCTCATTACTTCGCCAATGGCCTTGAAGCACGCTTGCATGGTGATGGCACTGGAACACAAGGATTCTACACCTATGTCAGCACCAAGAGGCTAAGTGCTGCTGAGTTTTTGAAAGCTTACAAGGTGTTCATGAATGCCTGCCCTTTTTCGAAGTTTGCAAATTTCTTTGCAAACAAAATGATAATGAAAGCAGCTCAAAATGCAGAAACACTTCACATCATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTGATTAAGTTCCTCTCAGACAGAGAAACTGGACCCCTCAAGAAGCTGAAGATCACAGGAATAGAGTTTCCCCAACCTGGTTTCCGTCCTGCAGAAAGACTTAACGAGACTGGTCGTCGTCTTGCTAACTACTGCGAGCGTTTCAAGGTTCCCTTCGAGTATAATGCCATAGCATCAAGGAACTGGGAAACCATCCAGGTTGAAGACCTTAAAATTGAGAGCAATGAGTTTCTTGCTGTGAACTGTCATAAGAGGTTTGAGAATTTGATGGATGAAACAATTGAAGTGAACAGTCCTAGAGATGCAGTGTTGCAGTTGATCAGGAAGATAAATCCGGATATTTTTGTTCAGGCCATTGTTAATGGATCTTATAATGCACCTTTCTTTGCCACACGATTCAGGGAGGCACTGTTCCATTTTTCTGCAATTTATGACATGTGTGACGCTGTCATCCCCCGTGACAATGAGAAGAGAATGAAGATTGAGAGAGAGATTATAGGCCGGGAGGTTTTGAATGTTGTGGCGTGCGAAGGTTTTGAAAGGATTGATAGGCCTGAGACATACAAGCAATGGCAGGCTAGGAATACAAGGGCTGGTTTCAAGCAGCTACCCTTGAATGAGGAACTAATGGCCAAATTTTCAGCCAAGTTAAAGGAATGGTACCACAAAGACTTTGTCTTAGATGAGGATGGCAACTGGATGCTTCAAGGTTGGAAGGGCCGCGTCTTATACGCTTCCACTTGTTGGGTGCCTGCATAG 2253 0.4434 MDPNYPIGGSDDFMNSFQIGEDGTIVFSDDQNQFYYDANQHLDPLYQHVADQLFDEFPQYTSHVEEAAAAPVASTVVDPSVEDADFSETAKFITQVLMEEGVEQRPFYDPFSLNATEQSFYDALNDVLIDNINMPLSPNEHPLDVHHQGGTTSSSSSGSNSGNNNDNQNNNNPVDENSSEFLKPSVSPDTFSSGDHAFQFNSHAISQHDSNVSYANFGVYDVDTSFTKLLAQNIFSDSDSVSQFRRGLEEASKFLPPGPQLVTGFETTPAVVVPIDEPKGDKAVGLKGRKNHEREEWSDDTEEGRSNKHSATSSVVDESELSEMFDKVLLSIGAPMCFPVNNEVEKASNPSTSNGGKGRPKRQGKKKETIDLRTLLVLCAQAVSACDNRTATELLKQIRQHSTPSGDATQRTAHYFANGLEARLHGDGTGTQGFYTYVSTKRLSAAEFLKAYKVFMNACPFSKFANFFANKMIMKAAQNAETLHIIDFGILYGFQWPILIKFLSDRETGPLKKLKITGIEFPQPGFRPAERLNETGRRLANYCERFKVPFEYNAIASRNWETIQVEDLKIESNEFLAVNCHKRFENLMDETIEVNSPRDAVLQLIRKINPDIFVQAIVNGSYNAPFFATRFREALFHFSAIYDMCDAVIPRDNEKRMKIEREIIGREVLNVVACEGFERIDRPETYKQWQARNTRAGFKQLPLNEELMAKFSAKLKEWYHKDFVLDEDGNWMLQGWKGRVLYASTCWVPA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00490 750 Pfam GRAS domain family 372 747 IPR005202 -
Aip03g00490 750 MobiDBLite consensus disorder prediction 279 317 - -
Aip03g00490 750 ProSiteProfiles GRAS family profile. 363 748 IPR005202 -
Aip03g00490 750 MobiDBLite consensus disorder prediction 344 358 - -
Aip03g00490 750 MobiDBLite consensus disorder prediction 146 188 - -
Aip03g00490 750 MobiDBLite consensus disorder prediction 280 307 - -
Aip03g00490 750 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 75 749 - -
Aip03g00490 750 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 75 749 IPR005202 -
Aip03g00490 750 MobiDBLite consensus disorder prediction 343 366 - -
Aip03g00490 750 MobiDBLite consensus disorder prediction 138 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00490 Aip-Chr3 4738364 4741855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00490 91 750 GRAS Transcription Factor Family AT1G07530 48.873 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g00490 GRAS 1.4e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00490 - - adu:107476834 1452.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00490 03 4738364 4741855 Aip03g00490 03 4738364 4741855 ECH
Aip08g00405 08 3095866 3098341 Aip03g00490 03 4738364 4741855 ECH
Aip08g00407 08 3108041 3111305 Aip03g00490 03 4738364 4741855 PCT
Aip03g00490 03 4738364 4741855 Aip08g00408 08 3125469 3127430 PCT