Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00489 ATGATCCATTGGCTTTACAAGCTGCTGAGAAATCATTGTATGATGCCATTGGTGGGACATACCCTCATCTTCCTCCTCATCCTCTTCCTCCTTCCATACAGCATCAAGCTCAAAACTACCACAATGTTGAAAGCCCTGATGATAGCCTCTCTAGTAACTTCAGTAGTTATAGTAGCAGCCTCAGCACCATTAGTACTAGCAACTTGGTTGAGTCACATTGGAGCAACTTTGACCCTTCAGAGTATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGGCACACAGTCTTCCACGAACAATAGAAATAGCTTTACTACAGCCAACAATGGTGGTGGATTGTTGGGGAGTTCAGGTGCTGGATTTTTTGATTCATCATTTCTGAGCAAAAGTGAGTCCATGCTGCAGTTTAAGAGGGGAATGGAGGAAGCCAGTAAGTTTCTTCCTAAGGGGAATCCGCTGGTTATTGACTTGGAGAATAGCACCTTTAACCCTTCTTTCCAAAAGGCTCCTCAGCATGTGGACATTAAGGAGGAGAGAGATGAAAGGGAGTATTTTTCTGGTGAGTCAAAAGGGAGAAAGAATCACGAGCGGGAAGATCAAGTGGAATTACAAGATGGGAGGAGCAACAAACAGTCTGCGATTTACAGGGAAGACAGTGAGCTATCAGAATTGTTTGATAAAATACTGCTCGGCACAGGGTGTGGAAAAGAGGCACCTCCCAGATGCATTTGTGACGAAGACAAACCTAATGGGCAAGACAAGAATGTGCAGCAGAAGGAAGAAACAAACAAGTTTAGCAGTGGAAAGAATCGTGTTAAGAAACAAGGTAATAAGAAGGGAGTTGTTGATCTGAGGACCCTATTGGTTCTGTGCGCACAAGCTGTTTCATCTGATGATCATTCAACTGCTACTGAGTTATTGAAGCAGATTAGACAGCACTCTTCACGTCTAGGTGATGGGTCTCAGAGGCTGGCACATTGTTTTGCAAATGCCCTTGAAGCACGCTTGGCCGGCTCTGGCACCCAGCTATACACTTCTCTGACCTCCAAAAGAAAATCTGCTGCAGATATGGTGAAAGCATATCAAATGTTTATATCAGCCTGCCCATTCAAGAAGCTTGCTATCATTTTTGCTAACCATACAATTCTGAACCTAGCCAAGCCCAAGGAAGTGGAAACTCTTCATATTGTTGATTTTGGTATCCGTTACGGCTTCCAGTGGCCTGCCCTTATTTTTCGTCTATCAAATAGACATGGTGGTCCTCCCAAGCTGCGCATAACAGGGATCGAGCTTCCACAACCAGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGGCGTCGCCTAGCTAAGTATTGTGAACGCTTTAATGTTCCTTTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAATTGAGGACCTTAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTGTATGGTTCGGTTTAAGAATCTACTTGATGAGACTGTTGTGTTGAATAGTCCCAGGGATGCTGTCTTGAAATTAATTAGGAAGGCCAATCCTAATATATTTATACACGCTACTGTCAATGGGAACTACAATGCCCCATTCTTTGTGACACGGTTCCGGGAGGCTCTTTTTCATTACTCTACATTGTTTGATGTGCTTGACACCAATGTTGATCGCGAAGATCCAATGAGGTTGATGTTTGAGGAGGAGTTCTTTGGCAGGGAGGTAGTGAATATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGCGACCCGAAACATACAAGCAATGGCAGGTTCGGAATACAAGGGCAGGGTTTAGGCAACTCCCCTTGGATGACCACCTCATTCACAAACTAAGATGTAAACTGAAAGATGTGTACCATGGTGATTTCATGCTTGATGTGGATGGCAACTACATGCTTCAAGGTTGGAAGGGCCGAATCATTTATGCTTCCTCTTGTTGGGTACCAGCATAG 1992 0.4342 MIHWLYKLLRNHCMMPLVGHTLIFLLILFLLPYSIKLKTTTMLKALMIASLVTSVVIVAASAPLVLATWLSHIGATLTLQSIXXXXXXXXXXXXNPGTQSSTNNRNSFTTANNGGGLLGSSGAGFFDSSFLSKSESMLQFKRGMEEASKFLPKGNPLVIDLENSTFNPSFQKAPQHVDIKEERDEREYFSGESKGRKNHEREDQVELQDGRSNKQSAIYREDSELSELFDKILLGTGCGKEAPPRCICDEDKPNGQDKNVQQKEETNKFSSGKNRVKKQGNKKGVVDLRTLLVLCAQAVSSDDHSTATELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKSAADMVKAYQMFISACPFKKLAIIFANHTILNLAKPKEVETLHIVDFGIRYGFQWPALIFRLSNRHGGPPKLRITGIELPQPGFRPAERVQETGRRLAKYCERFNVPFEFNAIAQKWETIKIEDLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFFGREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDDHLIHKLRCKLKDVYHGDFMLDVDGNYMLQGWKGRIIYASSCWVPA 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00489 663 ProSiteProfiles GRAS family profile. 279 661 IPR005202 -
Aip03g00489 663 MobiDBLite consensus disorder prediction 169 219 - -
Aip03g00489 663 Pfam GRAS domain family 288 660 IPR005202 -
Aip03g00489 663 MobiDBLite consensus disorder prediction 175 219 - -
Aip03g00489 663 MobiDBLite consensus disorder prediction 94 113 - -
Aip03g00489 663 MobiDBLite consensus disorder prediction 90 113 - -
Aip03g00489 663 MobiDBLite consensus disorder prediction 244 277 - -
Aip03g00489 663 MobiDBLite consensus disorder prediction 244 272 - -
Aip03g00489 663 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 114 662 IPR005202 -
Aip03g00489 663 PANTHER SCARECROW-LIKE PROTEIN 14 114 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00489 Aip-Chr3 4733187 4736497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00489 122 663 GRAS Transcription Factor Family AT1G07530 59.140 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g00489 GRAS 3e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00489 - - ahf:112736647 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00489 03 4733187 4736497 Aip03g00489 03 4733187 4736497 ECH
Aip08g00407 08 3108041 3111305 Aip03g00489 03 4733187 4736497 ECH
Aip08g00408 08 3125469 3127430 Aip03g00489 03 4733187 4736497 PCT