Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00482 ATGGCTATGGCAAAAAATGTGCTCTACATTGTGCCCATCATCACATTATTAATTTGCATGGTCGAAGCAAGGATCCCAGGTGTCTACACTGGCGGCGCGTGGCAAAGTGCTCACGCCACCTTCTATGGTGGATCTGATGCTTCCGGAACCATGGGTGGAGCATGTGGTTATGGGAACTTGTACAGCCAAGGGTACGGCGTTAACACGGCGGCATTGAGCACGGCGCTGTTCAACAGTGGGCTGAGCTGCGGCGCGTGTTTTGAGATAAAGTGCGCAAACGACAAGCAGTGGTGCCATTCCGGTAGCCCTTCCATCTTCATAACCGCCACTAACTTCTGTCCACCTAACTATGCGCTTCCAAATGACAATGGTGGTTGGTGCAACCCTCCTCGCCCACACTTTGACCTCGCCATGCCAATGTTTCTTAAGATTGCTGAGTACCGCGCCGGAATTGTCCCCGTTGCTTATCGCCGGGTGCCATGCAGAAAGCACGGTGGGATTAGGTTCACAGTCAACGGATTCCGTTACTTCAACCTGGTTCTGATAAGCAACGTGGCGGGGGCTGGGGACATCACTAGGACCTACATTAAGGGCTCAAGGACGGGCTGGATGCCCATGAGCCGTAACTGGGGCCAGAACTGGCAGTCCAACGCGGTTTTGGTGGGCCAGGCCCTTTCATTTCGGGTCACAGCCAGTGACCGCCGTAGCTCTACCTCTTGGAACATTGCTCCATCCAATTGGCAATTTGGTCAAACTTTCACTGGCAAGAATTTCCGTATCTGA 783 0.5326 MAMAKNVLYIVPIITLLICMVEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTVNGFRYFNLVLISNVAGAGDITRTYIKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIAPSNWQFGQTFTGKNFRI 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00482 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Aip03g00482 260 Gene3D - 21 162 IPR036908 -
Aip03g00482 260 PANTHER EXPANSIN 5 259 - -
Aip03g00482 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Aip03g00482 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Aip03g00482 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Aip03g00482 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Aip03g00482 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Aip03g00482 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Aip03g00482 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Aip03g00482 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Aip03g00482 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Aip03g00482 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Aip03g00482 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Aip03g00482 260 PANTHER EXPANSIN-A15 5 259 IPR002963 GO:0009664
Aip03g00482 260 Gene3D - 166 258 IPR036749 -
Aip03g00482 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Aip03g00482 260 SMART dpbb_1 69 156 IPR007112 -
Aip03g00482 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00482 Aip-Chr3 4684171 4686686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00482 8 260 Expansin Gene Family AT2G39700 82.609 2.17e-162 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00482 - - gmx:100811296 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00482 03 4684171 4686686 Aip03g00482 03 4684171 4686686 ECH
Aip03g00482 03 4684171 4686686 Aip07g01007 07 12916635 12918839 ECH
Aip08g00413 08 3174388 3176651 Aip03g00482 03 4684171 4686686 ECH
Aip04g01838 04 81242812 81245894 Aip03g00482 03 4684171 4686686 ECH
Aip02g02015 02 87061415 87064574 Aip03g00482 03 4684171 4686686 ECH
Aip08g00413 08 3174388 3176651 Aip03g00482 03 4684171 4686686 PCT