Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00474 ATGGAGCTGTTGCACCCTCTTCCTCCTCACCACCACGACCCGCCACTCGCAGCAGACGCCCTCCACCGCTACTCTCCTCCTCCCTCCACGAGCTCGCGCGTTGAGTTCCACGCCCTGGCAACCCCCCCTGAAGCCGCCGCTGAAGAGGACAAGGTGCACGTGGCAGTTGGCAAGTCGGTGGGAAAAGGTGCCACTTTGCTTCAATGGGCTTTCTCAAACTTCACCAACCCACACATTCTTTTGCTTCATGTTCATCAACCTTCTCCTTTCATCCCTACACTATTGGGGAAGTTACCAGCATCTCAGGCTAATCCTGAAGTGGTCTCTGCTTTTAGAAGAGAGGAAAAAGAACAGGCCATGAGGCTTTTGGACAATTACTTGAGAATTTGCCGTGCAGCCAAGGTCAATTTGTTTGAATCTGCTCATGCACAGGAAGTAAAGCTCAGACAAGAGGCAGAGGATGAGTTGAGAACCACAGTAAAGGATCAACAAAAGCTCCTAGATGAGAATGAAGAAATTGGTAGTGAGTTACAAAGAACCATGAGAAGTATTGCCATCCTAAACAGTTGTGTGCAGGAAACAGACCATAGGCGAGATGCAGCTGAAGATGAACTATCACTAATTCAAGCATCCATCTCCACACTCTGGCACGAAAAACAGCAGATCAGGCGACAGAAAATGGAAGCCATCCGCTGGCTGGACCGGTGGAAAAGCCGTGGGCAAGTTGGAGTTGCTCATTGTAATGGAGTTGTAGGATTTGCTGAGGAGTTACCTGAGATAGCAGAATTTTCATTATTGGATATTCAAAATGCCACGTGCAATTTTTCTGAAAGCTTTAAAATTAAGGAGGGTGGATATGGCGCTATTTATAAGGGAGAAATGTTGGGTAGGACAGTTGCTGTAAGAAAGCTCCATTCTCACAATTTGCAAGCACCTTCACAGTTTCACCAAGAGGTTCAAGTTCTTGGTAGTTTTCAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAATCCAGAGTTTCAGAGAACTGGACTAACACCAAAGTCTGACATATACTCCTTTGGCCTCATTATTTTGCAACTCTTGACTGGTCGGACTCCAGTTGGATTAGTTGGTGAAGTACAGAAAGCCGTTACATATGGACGATTGTCCTCAATTTTAGATTCTTCGGTTGGCGAATGGCCTTTGGCTGTGGCAACACGATTGGCTGACCTCGGATTACAGTGCTGCCAACAATATAGTAGAGACAGACCAGAGTTAACACCGTCTCTGGAAATAATGCACGATCCTCAAGTTGCAGCAGATGGATTTACTTATGAAAGGGATGCCATAACTGAATGGCTCGAAAATGGACATGAAACTTCTCCCATGACCAATCTGAAACTGAATCATCTGTATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAAGAATGGCTTTGCAAACCCTGA 1500 0.4627 MELLHPLPPHHHDPPLAADALHRYSPPPSTSSRVEFHALATPPEAAAEEDKVHVAVGKSVGKGATLLQWAFSNFTNPHILLLHVHQPSPFIPTLLGKLPASQANPEVVSAFRREEKEQAMRLLDNYLRICRAAKVNLFESAHAQEVKLRQEAEDELRTTVKDQQKLLDENEEIGSELQRTMRSIAILNSCVQETDHRRDAAEDELSLIQASISTLWHEKQQIRRQKMEAIRWLDRWKSRGQVGVAHCNGVVGFAEELPEIAEFSLLDIQNATCNFSESFKIKEGGYGAIYKGEMLGRTVAVRKLHSHNLQAPSQFHQEVQVLGSFQHPHLLTLLGVCPEAWSLVYEYLPNGNPEFQRTGLTPKSDIYSFGLIILQLLTGRTPVGLVGEVQKAVTYGRLSSILDSSVGEWPLAVATRLADLGLQCCQQYSRDRPELTPSLEIMHDPQVAADGFTYERDAITEWLENGHETSPMTNLKLNHLYLTPNHALRLAIQEWLCKP 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00474 499 Pfam Protein tyrosine and serine/threonine kinase 280 352 IPR001245 GO:0004672|GO:0006468
Aip03g00474 499 SUPERFAMILY Protein kinase-like (PK-like) 261 436 IPR011009 -
Aip03g00474 499 PANTHER OS10G0100500 PROTEIN 440 498 - -
Aip03g00474 499 PANTHER OS10G0100500 PROTEIN 133 352 - -
Aip03g00474 499 PANTHER OS10G0100500 PROTEIN 40 136 - -
Aip03g00474 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 498 IPR013083 -
Aip03g00474 499 PANTHER OS02G0152300 PROTEIN 352 439 - -
Aip03g00474 499 PANTHER OS02G0152300 PROTEIN 440 498 - -
Aip03g00474 499 SUPERFAMILY RING/U-box 438 498 - -
Aip03g00474 499 Pfam U-box domain 439 498 IPR003613 GO:0004842|GO:0016567
Aip03g00474 499 PANTHER OS10G0100500 PROTEIN 352 439 - -
Aip03g00474 499 PANTHER OS02G0152300 PROTEIN 40 136 - -
Aip03g00474 499 PANTHER OS02G0152300 PROTEIN 133 352 - -
Aip03g00474 499 Gene3D Transferase(Phosphotransferase) domain 1 352 440 - -
Aip03g00474 499 SMART Ubox_2 438 495 IPR003613 GO:0004842|GO:0016567
Aip03g00474 499 CDD RING-Ubox_WDSUB1_like 438 474 - -
Aip03g00474 499 Gene3D HUPs 45 162 IPR014729 -
Aip03g00474 499 MobiDBLite consensus disorder prediction 1 32 - -
Aip03g00474 499 Coils Coil 149 169 - -
Aip03g00474 499 ProSiteProfiles U-box domain profile. 438 499 IPR003613 GO:0004842|GO:0016567
Aip03g00474 499 Gene3D Phosphorylase Kinase; domain 1 252 347 - -
Aip03g00474 499 ProSiteProfiles Protein kinase domain profile. 275 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00474 Aip-Chr3 4606518 4611010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00474 342 495 Plant U-box Gene Family AT5G57035 44.444 4.02e-41 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aip03g00474 PK_Tyr_Ser-Thr 8.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00474 - - aip:107629106 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00474 03 4606518 4611010 Aip03g00474 03 4606518 4611010 ECH