Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00469 atgcttgagcttcgaaaccaccatagccgacctcgtctcctgcctccgtcgcgcagccattgtcccgccggcgccaactctgttccaccgcACTTGAATCGTGCTCTTATCCCTCGCAACACTTTCAAAGCCACGCTTCACTTAAGGGACACTCTTCAAGCCGCCAAGGATTTCCTCACCTTCGCTGCTCATTGCAGTAAGATTTTCATGGTTCTTGAGAGGGACCAAATTATGACTAAGTTCTATGAGGTCTCGGCTAGGTTGGAGCAGTCTTTGGCGGCGGTTTCATGTGATCAACTCGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTCAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATACCAAGTTGTATGAGGATGTGTTGTCCCTCTATAACAATAACACTGATGTAGCTACCAATCCAGATGTTTTTCGGCAGTTAGCAGAGAAGTTGGAATTGATGGGAATAACTGATCTCACACAAGAGTCACTTGCGCTGCACGAGATGGTGGCCGCAAGTGGTGGCGATCCGGCCGGACGCATTGAGAAGATGTCCATGCTATTGAAGAAGATAAAAGATTTTGTTCAAACTGAAAATCTAGTTGTGTATGATACTGTAGGAGGAAAGGACCATTCTTCAAAAACCAGCAAACAAGTCACAAATGAAAGGAATCATCAGACGCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTAGAAGCAGGGCATGGTACATGCCCAAAAACACAGCAGAGCCTCACTAGTACCGTCCTCACACCCAACTATGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATGGAACCACCGAGACGACCAAGCAATTCCGAACCTAGTAAATCAGTGTCGGCTTATGCCCCGGCCGAGCGAAGCAAGATTGAAACTCTTCTCCAAAGGCTGACTTGTGGCAGTCCAGAAGAGCGAAGAACAGCTGCAGGGGAGATCCGGCTTCTTGCAAAGCGCAATGCAGATAACCGTGTAGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTCTCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACCGCACTTCTGAATCTTTCCATATATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATTCCAGGCATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATTGATGAAAACAAGGTTACAATTGGTGCTTCAGGAGCCATACCTCCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCAATCAGGGCCGGTGCCATTCCCACATTGATGAAACTTGTAACAGAACCCAATGGAAGCATGGTGGATGAAGCGTTGGCCATTTTGGCAATATTGTCTAGCCATCCAGATGGAAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCCTTTTTGGTACAGTTTATTGCAAATGGTTCACCCAGGAACAAAGAAAATGCGGCTGCTGTCTTGGTTCATCTTTCTTCTGGAGATCAACAATATCTGGCTCAGGCCCGAGAGCTCGGTGTGATGGATCCTTTGTTGGATTTGGCTCAAAATGGCACAGATAGAGGAAAAAGGAAGGCAGCACAATTGCTAGAACGCATGAGCAGGTTCCTTGAGCAGCAGACTCAAACTGAACTGCACCATGTTGCACATACCAGCATTGATAATACCTGA 1899 0.4381 MLELRNHHSRPRLLPPSRSHCPAGANSVPPHLNRALIPRNTFKATLHLRDTLQAAKDFLTFAAHCSKIFMVLERDQIMTKFYEVSARLEQSLAAVSCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDTKLYEDVLSLYNNNTDVATNPDVFRQLAEKLELMGITDLTQESLALHEMVAASGGDPAGRIEKMSMLLKKIKDFVQTENLVVYDTVGGKDHSSKTSKQVTNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLEAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGMEPPRRPSNSEPSKSVSAYAPAERSKIETLLQRLTCGSPEERRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAIRAGAIPTLMKLVTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVQFIANGSPRNKENAAAVLVHLSSGDQQYLAQARELGVMDPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQTQTELHHVAHTSIDNT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00469 632 SMART Ubox_2 241 304 IPR003613 GO:0004842|GO:0016567
Aip03g00469 632 Pfam U-box domain 238 308 IPR003613 GO:0004842|GO:0016567
Aip03g00469 632 Pfam Armadillo/beta-catenin-like repeat 365 404 IPR000225 GO:0005515
Aip03g00469 632 Pfam Armadillo/beta-catenin-like repeat 448 486 IPR000225 GO:0005515
Aip03g00469 632 ProSiteProfiles U-box domain profile. 237 311 IPR003613 GO:0004842|GO:0016567
Aip03g00469 632 MobiDBLite consensus disorder prediction 1 25 - -
Aip03g00469 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Aip03g00469 632 Pfam Neurochondrin 498 618 IPR008709 -
Aip03g00469 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Aip03g00469 632 SUPERFAMILY ARM repeat 336 615 IPR016024 -
Aip03g00469 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 311 IPR013083 -
Aip03g00469 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Aip03g00469 632 CDD RING-Ubox_PUB 242 284 IPR045210 -
Aip03g00469 632 MobiDBLite consensus disorder prediction 308 330 - -
Aip03g00469 632 MobiDBLite consensus disorder prediction 218 239 - -
Aip03g00469 632 SMART arm_5 447 487 IPR000225 GO:0005515
Aip03g00469 632 SMART arm_5 529 569 IPR000225 GO:0005515
Aip03g00469 632 SMART arm_5 571 611 IPR000225 GO:0005515
Aip03g00469 632 SMART arm_5 488 528 IPR000225 GO:0005515
Aip03g00469 632 SMART arm_5 406 446 IPR000225 GO:0005515
Aip03g00469 632 SMART arm_5 365 405 IPR000225 GO:0005515
Aip03g00469 632 PANTHER U BOX DOMAIN-CONTAINING 35 622 - -
Aip03g00469 632 SUPERFAMILY RING/U-box 226 313 - -
Aip03g00469 632 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 35 622 - -
Aip03g00469 632 Gene3D - 322 630 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00469 Aip-Chr3 4567651 4570453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00469 37 619 U-box Gene Family AT3G46510 68.954 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00469 - - gmx:100812160 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00469 03 4567651 4570453 Aip03g00469 03 4567651 4570453 ECH