Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00468 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCAGCAGCAAGGGAATGTCAATGATAACCCTCACCTACTTCCGCCGCTACCCCCACAGGTTCAGGCAGGACCTGTGGGAGGAGGCGGCGCAATTGCTGGCTCGATCAGACCTGGGTCAATGGCTGATCGAGCCAGGCTAGCAAAGATACCACCTCCAGAGGCTGCCCTCAAGTGTCCTCGTTGCGATTCCACGAACACCAAGTTCTGTTACTTCAACAACTACAGCCTGTCTCAGCCCCGCCACTTCTGCAAGGCCTGTAGGCGCTACTGGACAAAAGGTGGCACTCTGAGGAACGTTCCGGTGGGCGGTGGTTGCCGCCGTAACAAGAAGAACAAGAGGAGTAGTAGCCGGTCGAAATCTCCACCAAACAATAACAATGAAAAGCAACAATCATCGAGTGCAATTCCTTCAAACAACATCCCTCCTCATGAGCTGATTGGTCATCATCAGTTATCTCATCAACCACCACCAAACCTTCCTTTCATGGCTTCTCTCCAGAATCATCTTAGCCGCTATGGTGGGGGAGGAGGAGTTGCTTCAAACATGGGTCTGAGCTTAACGGATCATCATCCTCACATGGGGTTTGTTGGTAATGGAGGAGTAGTGGATCAGTGGCGGCTGCAGCAGTTTCCGTTCTTAAACGGTTTTGATTCGAATTCTTCTTCAGCTGCAGTAGCATCGTCGATATCATACCCTAACACTTTTCATCATGAAAATGATCATCATCAAGGTATTGGTGGTGGTGAAGCAGTAGGTTCTTCAGGCTTGGTTGTTGGTGTTGACATAGCTGGAAATTCTAGGGTTAATAATAATCAGATGCAACCACCAGTGAAAATGGAAGAAAACGGAGCCATGAATTTGTCATCAAGAACAACAACAACCAACTTGAATGTCTCTCATCATCATCAAAATCATCAATACTATTCTTGGAACACTGATATGTCAGCTCTAGCTGCTTCTTCTTCCACTCCTCATAATCTCTTATAA 1032 0.4709 MVFSSIPVYVDPPNWQQQGNVNDNPHLLPPLPPQVQAGPVGGGGAIAGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTKGGTLRNVPVGGGCRRNKKNKRSSSRSKSPPNNNNEKQQSSSAIPSNNIPPHELIGHHQLSHQPPPNLPFMASLQNHLSRYGGGGGVASNMGLSLTDHHPHMGFVGNGGVVDQWRLQQFPFLNGFDSNSSSAAVASSISYPNTFHHENDHHQGIGGGEAVGSSGLVVGVDIAGNSRVNNNQMQPPVKMEENGAMNLSSRTTTTNLNVSHHHQNHQYYSWNTDMSALAASSSTPHNLL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00468 343 MobiDBLite consensus disorder prediction 132 154 - -
Aip03g00468 343 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Aip03g00468 343 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Aip03g00468 343 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 13 336 - -
Aip03g00468 343 MobiDBLite consensus disorder prediction 112 176 - -
Aip03g00468 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 336 IPR045174 GO:0003700|GO:0006355
Aip03g00468 343 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00468 Aip-Chr3 4562968 4564662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00468 46 262 C2C2-Dof Transcription Factor Family AT3G55370 43.802 3.68e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip03g00468 zf-Dof 5e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00468 03 4562968 4564662 Aip03g00468 03 4562968 4564662 ECH
Aip08g00425 08 3251772 3252961 Aip03g00468 03 4562968 4564662 PCT