Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00448 ATGCGCCTAAACCCTACACTTACCAACGCCACCAATCTTCTATTCAAGAACTCTTGCCCTTTTTCTCCCTTGCTATTCCCGCGCCATTCATCTACCAATTTGTTAGTCACAGGACTATCCTATGATACGAACGAAACTGTTCTAAGAGATGCATTTGAACAACATGGCGAAATAATCGAAGTTAAAGTAATATGTGATCATGTCACTGGCAAATCAAAAGGCTATGGATTCGTTCGCTTCACTACTGAAACTTCAGCTGCTACAGGTCGCAAAGAAATGCATAAAAAGATTATAGATGGGAGACGCATTCGAGTGTGTTATGCTCACAAACAAGCCTAG 339 0.413 MRLNPTLTNATNLLFKNSCPFSPLLFPRHSSTNLLVTGLSYDTNETVLRDAFEQHGEIIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKIIDGRRIRVCYAHKQA 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00448 112 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 15 111 - -
Aip03g00448 112 SUPERFAMILY RNA-binding domain, RBD 20 110 IPR035979 GO:0003676
Aip03g00448 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Aip03g00448 112 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 111 - -
Aip03g00448 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Aip03g00448 112 Gene3D - 22 112 IPR012677 -
Aip03g00448 112 SMART rrm1_1 33 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00448 Aip-Chr3 4420427 4424079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00448 33 106 C2H2 Transcription Factor Family AT2G19380 43.243 6.23e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00448 K13195 - gmx:100306540 139.043