Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00444 ATGGTTAATTGCTTGATGTTACTAACAAAAGTTGGTGAGACCAAAACCAATAATAATCCATTGAAGGGTGGTGGCTTTAAGTGCAAGACATGTCATAGGAGGTTCCTATCTTTTCAAGCACTTGGAGGACACAGAGCGAGTCATAAGAAGCTTAAGCTCATGATGGGTGCAGATCTTTCGTGTCAATTACCATCAAGTTCTTCGTCATCATCGGGGAACATGATGACGAAGAACAAGATGCACTCCTGTTCTATTTGTGGGCTAGAGTTTGCGGTTGGACAAGCCCTTGGAGGACATATGAGAAAGCATAGAAATGGTGCCATGACCAAATCTAGTAGTGATGGTAGTATTAAAACTAGAAGGTTTAATTTGTGCTTAGACTTGAACCTCACGCCCTCTGAGAATGATCTCAAGCTTAACCTAAAGACTCCTATGTTGGATTGTTTTATTTGA 453 0.4084 MVNCLMLLTKVGETKTNNNPLKGGGFKCKTCHRRFLSFQALGGHRASHKKLKLMMGADLSCQLPSSSSSSSGNMMTKNKMHSCSICGLEFAVGQALGGHMRKHRNGAMTKSSSDGSIKTRRFNLCLDLNLTPSENDLKLNLKTPMLDCFI 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00444 150 Gene3D Classic Zinc Finger 23 103 - -
Aip03g00444 150 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Aip03g00444 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Aip03g00444 150 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Aip03g00444 150 PANTHER ZINC FINGER PROTEIN ZAT5 1 143 - -
Aip03g00444 150 SMART c2h2final6 81 103 IPR013087 -
Aip03g00444 150 SMART c2h2final6 26 48 IPR013087 -
Aip03g00444 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Aip03g00444 150 Pfam C2H2-type zinc finger 26 50 - -
Aip03g00444 150 Pfam C2H2-type zinc finger 81 104 - -
Aip03g00444 150 SUPERFAMILY beta-beta-alpha zinc fingers 26 103 IPR036236 -
Aip03g00444 150 PANTHER ZINC FINGER PROTEIN ZAT12 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00444 Aip-Chr3 4388749 4389350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00444 14 147 C2H2 Transcription Factor Family AT3G53600 47.945 2.09e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g00444 zf-C2H2_6 5.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00444 - - adu:107476874 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00444 03 4388749 4389350 Aip03g00444 03 4388749 4389350 ECH
Aip08g00439 08 3348353 3349109 Aip03g00444 03 4388749 4389350 ECH
Aip08g00439 08 3348353 3349109 Aip03g00444 03 4388749 4389350 PCT