Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00418 ATGAAGGAGTTCTCTTTGAATGTGAGCTCAGACACATTTGTGATCACTTTCATGCCATCAAACAACTCAATAGCCTTTGTCAATGCAATTGAAGTTGTTTCAGTTCCAGATGACCTCATTGTTGATGATGCTTACACCTTAAAACCATCATTAGCACCTTATTATGGGTTGTATTCACAAGCATTAGAGACTGTTTACAGGGTTAACATGGGTGGTCCCAAAGTCTCTGCCGACAATGACACCCTTCAACGAATTTGGGTTCCGGATCAGAGCTTCCTTATAAACTCAAACCTTGCAACTAGTAATTCAAACATTGCTGCTGTTAAGTACACAGAAGGTGGGCCAACCGAAAACACTGCTCCACCAGTTGTCTATGGTACTCTTAGACAGATGAATTCGATGTACGATCCCCGGTTTATTTTCAATGTGACATGGCAGTTTGATGTGGATCCTGGATTTGAGTACTTTCTTAGGCTTCATTTCTGTGATGTAATCAGTAGAAGTCTTAATGAACTCTATTTCAATGTTTACATTGACTCTTCTTATGCTGCCAAGGATCTTGATCTCAGTACAGAAACTAATAATGTTTTGGCTGCTCCATATTTTAAGGATTTGGTTACTCTCCCAACTGTTAGCAACCGAATTCGTGTGAGTATCGGTCCATCACTGACAAATACAGAGTATCCTAATGCCATATTGAATGGGCTGGAAATCATGAAAATGAACAACTCTATGAACAGTCTTAGTACAGCTACAATGGTGCCTGTAACAAGTGGTTCTGGTTCGAATTCTAAGAAAGTTGGGGTGATAGTTGGTTCGATTCTCGGGGCATGTAGTGTGATTGTCTTGATTGGAGTTTTATTTGTAATATACATGAAAAGGAGGAAGTTGGCACAGCAAAGACATTCAAAAACATGGATTCCAATATCTGTCAATGATGGAACTTCTCACACCATAGGAAGTAAATATTCTAATGGCACAACAGCAAGTGCGGCCACAAATTGTGGCTACCGCATTCCTTTCTTGGCTGTTCAGGAAGCTACAAACAGTTTTGATGAGAATTTGGTTATCGGCATAGGTGGTTTTGGCAAAGTATACAAGGGAGAATTGAGTGATGGAACTAAAGTTGCAGTTAAGAGAGGGAATCCTCGGTCGCAACAGGGTGTAGCCGAGTTTAGGACTGAAATCGAAATGTTGTCTCAATTCAGGCATCGACATTTGGTGTCACTGATTGGATATTGTGATGAAATGAATGAAATGATATTGATTTATGAATATATGGAGAAGGGAACTCTTAAGAGTCATTTGTATGGTTCCGGTCTTCCAAGCTTGAGTTGGAAAGAGAGGCTTGAGATATGCATAGGAGCTGCTCGGGGACTTCATTATCTTCATACCGGCTATGCAAAGGCGGTAATTCACCGCGATGTGAAGTCTGCAAACATCCTACTTGATGAGAACCTTATGGCGAAAGTAGCTGATTTCGGGCTATCAAAAACTGGTCCGGAAATTGACCAGACTCATGTTAGCACAGCTGTCAAGGGGAGCTTTGGATACCTTGATCCGGAGTATTTCCGAAGACAACAACTAACTGAGAAGTCAGATGTATATTCATTTGGGGTGGTACTCTTTGAAGTTCTTTGTGCAAGACCGGTCATAGACCCTTCCCTATCGAGGGAAATGGTGAACTTGGCAGAATGGGCGTTGAAGTGGCAGAAAAAAGGTCAGTTGGAACAGATCATAGATCCTACATTGACCGGGAAAATAAGACCGGATTCTCTCAGGAAGTTTGGCGAAACAGCCGAGAAATGCCTAGCTGAATTCGGTGTTGATAGGCCTTCTATAGGAGATGTCTTGTGGAATCTAGAGTATGCTCTCCAACTTCAGGAGGCTGTTTTTCAAGGTGATCCGGAAGAAAATAGCACCAACATGATCGGCGATCTCTCGCCCCAGATCAACAATTTTAGCCGCGAAGAAAGCGTTTCGGCCGCTCAATTTGAATTTCCAAGCCTTAATGATCTTTCTGGTGTTTCTATGAGTAAGGTGTTCTCACAGCTGGTGAAATCTGAAGGGCGATGA 2076 0.4205 MKEFSLNVSSDTFVITFMPSNNSIAFVNAIEVVSVPDDLIVDDAYTLKPSLAPYYGLYSQALETVYRVNMGGPKVSADNDTLQRIWVPDQSFLINSNLATSNSNIAAVKYTEGGPTENTAPPVVYGTLRQMNSMYDPRFIFNVTWQFDVDPGFEYFLRLHFCDVISRSLNELYFNVYIDSSYAAKDLDLSTETNNVLAAPYFKDLVTLPTVSNRIRVSIGPSLTNTEYPNAILNGLEIMKMNNSMNSLSTATMVPVTSGSGSNSKKVGVIVGSILGACSVIVLIGVLFVIYMKRRKLAQQRHSKTWIPISVNDGTSHTIGSKYSNGTTASAATNCGYRIPFLAVQEATNSFDENLVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGVAEFRTEIEMLSQFRHRHLVSLIGYCDEMNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLSREMVNLAEWALKWQKKGQLEQIIDPTLTGKIRPDSLRKFGETAEKCLAEFGVDRPSIGDVLWNLEYALQLQEAVFQGDPEENSTNMIGDLSPQINNFSREESVSAAQFEFPSLNDLSGVSMSKVFSQLVKSEGR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00418 691 Pfam Malectin-like domain 2 241 IPR024788 -
Aip03g00418 691 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Aip03g00418 691 Gene3D Phosphorylase Kinase; domain 1 314 426 - -
Aip03g00418 691 Gene3D - 60 243 - -
Aip03g00418 691 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 2 660 - -
Aip03g00418 691 Gene3D Transferase(Phosphotransferase) domain 1 427 644 - -
Aip03g00418 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Aip03g00418 691 CDD STKc_IRAK 357 622 - -
Aip03g00418 691 Pfam Protein tyrosine and serine/threonine kinase 356 549 IPR001245 GO:0004672|GO:0006468
Aip03g00418 691 SUPERFAMILY Protein kinase-like (PK-like) 331 622 IPR011009 -
Aip03g00418 691 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00418 691 ProSiteProfiles Protein kinase domain profile. 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g00418 691 PANTHER OS07G0166700 PROTEIN 2 660 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00418 Aip-Chr3 4103813 4107245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00418 1 691 Receptor kinase-like Gene Family AT3G46290 69.671 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Aip03g00418 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00418 - - gmx:100806488 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00418 03 4103813 4107245 Aip03g00418 03 4103813 4107245 ECH
Aip08g00456 08 3554215 3557520 Aip03g00418 03 4103813 4107245 ECH
Aip08g00456 08 3554215 3557520 Aip03g00418 03 4103813 4107245 PCT