Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g00417 ATGCATTCGTCGCCGTCGAGCGGAGCCGCATCTCATCAATGGCAATTGATGATGACGAACCAGTCGGAAGCGAGCATGAGCGCAAGCAGCGGGTGTAGCACGCCGAGTTCGTTGGCGAGTTGCGGTGACACCACTAGTCAGCGCGTGAGCGCCACGAAGATGCACAAGAGCGTGAGTAGCCACTCGCTGTTCTTGCAGAATAACAATAGCAGTGGGGTCCACCAAAACCGTAATCAGTTGTATCCATCCTTCTCTGCTCTTTTCTGCGAGTTTCTTAATTCCGATGACGCTCCCGTTCGCAGGGTTTACAGCACCGGTGATCTTCAGGAAGATACTTCACTATCAAGTGAGAGTAGTATGATAATAGAAGCAATGAGCAGAGCCAGTCCCTATAGTCCTGAAGAGAAGAAGATAAGAATTGAGAGATACAGAATCAAGAGAAACCAGAGGAACTTCAACAAGAAAATCAAGTATGCTTGTAGAAAAACATTGGCGGATAGCCGGCCGCGAATCAGAGGACGATTTGCGAAGAATGATGAAATTGTGAGAAACCCTCCATCACTTGAATGGTGCCAATTTGGTGCTGCTGGGGAGGAAAAAGATGAAGAAGATGAGAATAATTGGGTCAATTTATTTGATTCCTTAGACCCTGCAAATGTTGCTGCTCATCATCATCAAGAGCAACAAGATAGTTCCCCTTTCAGTGTATTCTACTAA 717 0.4658 MHSSPSSGAASHQWQLMMTNQSEASMSASSGCSTPSSLASCGDTTSQRVSATKMHKSVSSHSLFLQNNNSSGVHQNRNQLYPSFSALFCEFLNSDDAPVRRVYSTGDLQEDTSLSSESSMIIEAMSRASPYSPEEKKIRIERYRIKRNQRNFNKKIKYACRKTLADSRPRIRGRFAKNDEIVRNPPSLEWCQFGAAGEEKDEEDENNWVNLFDSLDPANVAAHHHQEQQDSSPFSVFY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g00417 238 Pfam CCT motif 139 178 IPR010402 GO:0005515
Aip03g00417 238 MobiDBLite consensus disorder prediction 18 53 - -
Aip03g00417 238 ProSiteProfiles CCT domain profile. 136 178 IPR010402 GO:0005515
Aip03g00417 238 PANTHER CCT MOTIF PROTEIN 19 238 - -
Aip03g00417 238 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 238 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g00417 Aip-Chr3 4092537 4094679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g00417 127 177 C2C2-CO-like Transcription Factor Family AT5G24930 54.902 9.08e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g00417 CCT 5.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g00417 - - adu:107477092 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g00417 03 4092537 4094679 Aip03g00417 03 4092537 4094679 ECH
Aip08g00459 08 3566957 3568202 Aip03g00417 03 4092537 4094679 PCT